DC900329

Overview
NameDC900329
Unique NameDC900329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 6.935e-21
Identity = 76/212 (35.85%), Postives = 103/212 (48.58%), Query Frame = 3
Query:   69 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYA-MELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            G L P+AI++  PP  SSP      T    +     W LAK  V ++D  + +L  H L TH   E   +AT R L  +HPI+KLL PH+RYT+EIN  +R  LI+ GGI +   S G    ++L + A      +     P DL  RG+      +PS +        YA D L +W     +V+  V  FY   + V  D ELQAW  EI
Sbjct:  309 GKLLPMAIQIQ-PPNPSSPAP----TLFLPSDPPLAWLLAKIWVRNSDFQLQELQFHLLNTHLVAEVIAVATMRCLPGLHPIFKLLVPHIRYTMEINTRSRTQLISDGGIFDQVVSTGGGGHVQLLTRAVAQL-TYHSLCPPDDLANRGLLR----IPSAL--------YARDALQLWEVTARYVKGMVHLFYQSDDIVRGDPELQAWCREI 502          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.183e-20
Identity = 68/228 (29.82%), Postives = 102/228 (44.74%), Query Frame = 3
Query:   36 ASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAME------LSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            A   +  +   G + P+AI+LS  P    P    I+       + W W LAK  V   +   H+ V H L +H   E + +A  R L   HP+YKLL PH RY ++IN++ R  L+N GG+   + S G           LS   YKS        +P D + RG+ +            +  Y +  D L +W A++ +V   + ++Y    +V  D ELQ W  EI
Sbjct:  338 APMCLLHFGPDGNMMPIAIQLSQTPGPDCP----IFLPND---SEWDWLLAKTWVRYAEFYSHEAVAHLLESHLIGEAFCLALLRNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSL------CIPNDFVERGVQD------------LPGYYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEI 540          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LX12B_RAT (Arachidonate 12-lipoxygenase, 12R type OS=Rattus norvegicus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.545e-20
Identity = 67/217 (30.88%), Postives = 99/217 (45.62%), Query Frame = 3
Query:   69 GMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAME------LSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            G + P+AI+LS  P    P    I+       + W W LAK  V   +   H+ V H L +H   E + +A  R L   HP+YKLL PH RY ++IN++ R  L+N GG+   + S G           LS   YKS        +P D + RG+ +            +  Y +  D L +W A++ +V   + ++Y    +V  D ELQ W  EI
Sbjct:  349 GNMMPIAIQLSQTPGPDCP----IFLPND---SEWDWLLAKTWVRYAEFYSHEAVAHLLESHLIGEAFCLALLRNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSL------CIPNDFVERGVQD------------LPGYYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEI 540          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX5_MESAU (Arachidonate 5-lipoxygenase OS=Mesocricetus auratus GN=ALOX5 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.635e-20
Identity = 73/220 (33.18%), Postives = 113/220 (51.36%), Query Frame = 3
Query:   48 VFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIE-ASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGM-AEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            + + N A  + P+AI+L+  P   +P    I+    DA   W+  LAK  V S+D  VHQ + H L TH   E + IA +RQL ++HPI+KLL  H+R+T+ IN  AR+ LI   G+ + A+ + G   +++   A +    +     P  +  RGM + ED          I  Y Y  DGLL+W AI+ +    V+ +Y +   V  D ELQ +  ++
Sbjct:  311 LLYKNLANKIVPIAIQLNQAPGEKNP----IFLPS-DAKYDWL--LAKIWVRSSDFHVHQTITHLLCTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICEYGLFDKANATGGGGHVQMVQRAVQDL-TYSSLCFPEAIKARGMDSTED----------IPYYFYRDDGLLVWEAIQSFTSEVVSIYYEDDQVVMEDQELQDFVKDV 512          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX5_MOUSE (Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alox5 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.442e-20
Identity = 70/219 (31.96%), Postives = 111/219 (50.68%), Query Frame = 3
Query:   48 VFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIE-ASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            + + N A  + P+AI+L+  P  S+P    I+       + + W LAK  V S+D  VHQ + H L TH   E + IA +RQL ++HP++KLL  H+R+T+ IN  AR+ LI   G+ + A+ + G   +++   A +    +     P  +  RGM +    MP         Y Y  DGLL+W AI+ +    V+ +Y     V  D ELQ +  ++
Sbjct:  312 LLYKNLANKIVPIAIQLNQTPGESNP----IFL---PTDSKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPLFKLLVAHVRFTIAINTKAREQLICEYGLFDKANATGGGGHVQMVQRAVQDL-TYSSLCFPEAIKARGM-DSTEDMPF--------YFYRDDGLLVWEAIQSFTMEVVSIYYENDQVVEEDQELQDFVKDV 513          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX5_HUMAN (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.308e-19
Identity = 72/219 (32.88%), Postives = 111/219 (50.68%), Query Frame = 3
Query:   48 VFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIE-ASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            + + N A  + P+AI+L+  P   +P    I+    DA   W+  LAK  V S+D  VHQ + H L TH   E + IA +RQL ++HPI+KLL  H+R+T+ IN  AR+ LI   G+ + A+ + G   +++   A K    +     P  +  RGM  ++          I  Y Y  DGLL+W AI+ +    V  +Y     V  D ELQ + +++
Sbjct:  312 LLYKNLANKIVPIAIQLNQIPGDENP----IFLPS-DAKYDWL--LAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDL-TYASLCFPEAIKARGMESKED---------IPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDV 513          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX5_RAT (Arachidonate 5-lipoxygenase OS=Rattus norvegicus GN=Alox5 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.970e-19
Identity = 66/219 (30.14%), Postives = 109/219 (49.77%), Query Frame = 3
Query:   48 VFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIE-ASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            + + N A  + P+AI+L+  P   +P    I+       + + W LAK  V S+D  +HQ + H L TH   E + IA +RQL ++HP++KLL  H+R+T+ IN  AR+ L    G+ + A+ + G   +++   A +    +     P  +  RGM   +          I  Y Y  DGLL+W AI+ +    V+ +Y +   V  D ELQ +  ++
Sbjct:  311 LLYKNLANKIVPIAIQLNQTPGEKNP----IFL---PTDSKYDWLLAKIWVRSSDFHIHQTITHLLRTHLVSEVFGIAMYRQLPAVHPLFKLLVAHVRFTIAINTKAREQLNCEYGLFDKANATGGGGHVQMVQRAVQDL-TYSSLCFPEAIKARGMDNTED---------IPYYFYRDDGLLVWEAIQSFTTEVVSIYYEDDQVVEEDQELQDFVKDV 512          
The following BLAST results are available for this feature:
BLAST of DC900329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX12_MOUSE6.935e-2135.85Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]
LX12B_MOUSE1.183e-2029.82Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]
LX12B_RAT1.545e-2030.88Arachidonate 12-lipoxygenase, 12R type OS=Rattus n... [more]
LOX5_MESAU2.635e-2033.18Arachidonate 5-lipoxygenase OS=Mesocricetus auratu... [more]
LOX5_MOUSE3.442e-2031.96Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alo... [more]
LOX5_HUMAN1.308e-1932.88Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
LOX5_RAT4.970e-1930.14Arachidonate 5-lipoxygenase OS=Rattus norvegicus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900329 VSS Citrus sinensis cDNA clone VS28679 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900329 ID=DC900329; Name=DC900329; organism=Citrus sinensis; type=EST; length=826bp
AGAAAATAAACTCCTTGCCAGATAGAAAAACATATGCCTCTAGGACAGTT
TTCTTCTATAACAAGGCTGGCATGCTGAGGCCACTAGCTATAGAGCTATC
CCTTCCTCCAACACGTTCTTCGCCTCAGAATAAACACATTTACACTCATG
GNCATGATGCTACAACACATTGGATTTGGAAGCTGGCCAAAGCTCATGTC
TGTTCAAATGATGCTGGAGTCCACCAACTAGTAAATCACTGGTTGATGAC
TCATGCTTCTATGGAGCCTTATATAATTGCAACACACAGACAGCTTAGTT
CAATGCACCCCATTTATAAGTTGCTTCATCCTCACATGCGCTACACGCTA
GAAATTAATGCACTTGCACGGCAAAGTTTAATAAACGGAGGGGGTATAAT
TGAGGCTTCTTTCAGCCCAGGAAGGTATGCCATGGAGCTAAGCTCTGCAG
CCTACAAGAGTTTTTGGAGGTTTGACATGGAGGCATTGCCTGCAGATCTT
TTGCGCAGGGGTATGGCTGAGGAGGATCCTTCAATGCCTAGCGGTGTAAG
ACTTGTGATTGAAGACTACCCGTATGCAGCAGATGGGCTTCTTATCTGGT
GTGCTATAAAAGAGTGGGTAGAATCATATGTTGCACACTTCTACTCAGAA
CCAAATTCTGTCACGTCTGATGTTGAGCTCCAAGCATGGTGGAGTGAGAT
TAAGAACAAGGGCNCCATGACAAAGGGATGAGGCATGGNGGCCAACTTGA
ACCAAGAGACTGCTGGATATACATATGTCGGCTGATAGNAGAGCGCTACT
GCATCTTGGGATGCACGCCTAGACGC
back to top