DC900327

Overview
NameDC900327
Unique NameDC900327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:336..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.854e-39
Identity = 72/95 (75.79%), Postives = 85/95 (89.47%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            KLG P +TY+DF +S+P +ECRYAVYD+DF T +NCQKS+IFFIAWSPDT+RVRSKM+YASSKDRFKRE++GIQVELQATDPSEM LD+ K R N
Sbjct:   45 KLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRLN 139          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 2.854e-39
Identity = 73/94 (77.66%), Postives = 86/94 (91.49%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            +LG+P  TY+DF AS+PA ECRYAV+D+DFVT ENCQKS+IFFI+WSPDT++VRSKM+YASSKDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:   45 RLGQPGDTYDDFTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.727e-39
Identity = 72/94 (76.60%), Postives = 87/94 (92.55%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            +LG+P ++Y+DF A LPA+ECRYAV+D+DFVT ENCQKS+IFFI+W+PDT+RVRSKM+YASSKDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:   45 RLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.029e-38
Identity = 70/94 (74.47%), Postives = 84/94 (89.36%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            +LG+P ++Y+DF   LP  ECRYAV+D+DFVT ENCQKS+IFFI+WSPDT+RVRSKM+YAS+KDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:   45 RLGQPNESYDDFTECLPPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.029e-38
Identity = 71/95 (74.74%), Postives = 80/95 (84.21%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            +LGEP Q Y DF  SLPA+ECRYA+YD DF T ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ K R N
Sbjct:   45 RLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSRTN 139          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.199e-37
Identity = 71/95 (74.74%), Postives = 84/95 (88.42%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            +LG+  + YEDFAA+LPA+ECRYAVYD DFVT ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ + RA+
Sbjct:   45 RLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARAH 139          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.671e-37
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            KLG P + Y+DF   LP  ECRYAVYD+DF TAEN QKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM LD+ K RA
Sbjct:   43 KLGSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.488e-37
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            +LGEP Q Y DF  SLPA ECRYA+YD DF T ENCQKS+IFF +WSPDTAR RSKM+YASSKDRF+RELDGIQ E+QATDPSEM LD+ + R N
Sbjct:   45 RLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSRTN 139          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.499e-35
Identity = 61/95 (64.21%), Postives = 86/95 (90.53%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            K G P +++++FAA+LP  +CRYAVYD+DFVT+ENCQKS+IFFIAWSPD++R+R+KM+YA+SK+RF+RELDG+  E+QATDP+EM L+V ++RA+
Sbjct:   49 KTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERAH 143          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.981e-32
Identity = 59/95 (62.11%), Postives = 80/95 (84.21%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            K G PT++Y+DF ASLP  +CRYAVYD+DFVT+ENCQKS+IFF AWSP T+ +R+K++Y++SKD+  REL GI  E+QATDP+E+ L+V ++RAN
Sbjct:   52 KTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
The following BLAST results are available for this feature:
BLAST of DC900327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
ADF8_ARATH2.854e-3975.79Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF6_ORYSJ2.854e-3977.66Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF1_ORYSJ3.727e-3976.60Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF_LILLO7.029e-3874.47Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF2_MAIZE7.029e-3874.74Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF9_ORYSJ1.199e-3774.74Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF12_ARATH2.671e-3776.60Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF1_MAIZE3.488e-3773.68Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF_VITVI9.499e-3564.21Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF6_ARATH1.981e-3262.11Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionDC900327 VSS Citrus sinensis cDNA clone VS28677 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900327 ID=DC900327; Name=DC900327; organism=Citrus sinensis; type=EST; length=510bp
AAAACTTGGTGAGCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTC
CTGCTGAGGAGTGCCGATATGCTGTGTATGATTATGATTTTGTTACCGCA
GAGAACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACAC
TGCAAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCA
AGAGAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCT
GAGATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTCC
TGATCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGGT
GAAATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGATA
TTGGTTTGTTGTTCAAGTTTCACCGATGCAGTATTCTCGTCTAGAACCAT
TTCAGTGGTCTTTATGATGTCTTTATTGATTTGTTGTGGGGGTGGAAGTT
ATGGGGATGA
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