DC900327

Overview
NameDC900327
Unique NameDC900327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:336..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 2
Query:    2 KLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE-----------NCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            ++G     +++  ASLPA+ CRYAVYD+DF  ++              +S+IFF++WSP  A VRSKM+YASS + FK+ELDG+Q++LQATDPSE+ LDV KD  +
Sbjct:   45 RVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.204e-21
Identity = 46/93 (49.46%), Postives = 68/93 (73.12%), Query Frame = 2
Query:    5 LGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            +G P  TYEDF + LP  +CRYA++DY+F   +  Q+++I FI W+PD+A ++SKM+Y S+KD  K++L GIQVE+QATD +E+  D   +RA
Sbjct:   42 VGGPNATYEDFKSQLPERDCRYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.246e-18
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 2
Query:   17 TQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            T +Y+ F   LP  +CRYAVYD+++ +++   ++S++ F  WSPDTA VRSKMIYASSKD  +R L GI  E+Q TD SE+  +   +R +
Sbjct:   57 TDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLERVS 147          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.126e-18
Identity = 38/88 (43.18%), Postives = 61/88 (69.32%), Query Frame = 2
Query:   23 TYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            +Y+DF A LP  ECRYA+YD+++   +  ++++I F +WSPD A+++ KM++ASSKD  ++ L GI  E+Q TD SE+  D   D+ +
Sbjct:   48 SYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDKVS 135          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.055e-17
Identity = 40/91 (43.96%), Postives = 61/91 (67.03%), Query Frame = 2
Query:   17 TQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            +Q+Y++F   LP  +C YA+YD+++    N  ++S+I F  WSPDTA VRSKM+YASSKD  +R L G+  ++Q TD SE+  +   +R +
Sbjct:   47 SQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.351e-17
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 2
Query:   23 TYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            +Y+ F   LP  +C YAVYD+++  +E+  ++S+I F  WSPDTA VR KM+YASSKD  KR L+G+ +E+Q TD SE+  +   ++ +
Sbjct:   49 SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEKVS 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.010e-17
Identity = 39/89 (43.82%), Postives = 59/89 (66.29%), Query Frame = 2
Query:   23 TYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            +Y+ F   LP  +C YA+YD+++ +     ++S+I F  WSPDTA VRSKM+YASSKD  +R L+G+  ++Q TD SE+  D   +R +
Sbjct:   49 SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.933e-17
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 2
Query:   20 QTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 265
            Q Y+ F   LP  +C YAVYD+++    N  ++S+I F  WSPDTA VRSKM+YASSKD  +R L+G+  ++Q TD SE+  +
Sbjct:   48 QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.933e-17
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 286
            Y+ F   LP  EC+YA+YD+++ +     ++S+I F  WSPDTA ++SKMIYASSKD  +R L+G+  ++Q TD SE+  +   DR +
Sbjct:   50 YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
BLAST of DC900327 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.167e-16
Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   26 YEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 283
            ++ F A LP ++CR+AVYD++F +      ++++ FI WSPD A V++KMI+ASSK+  +R LDGI  E+QATD SE+  D   ++A
Sbjct:   49 FDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDALFEKA 135          
The following BLAST results are available for this feature:
BLAST of DC900327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
ADF3_ORYSJ3.387e-2449.06Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]
ACTP_ACACA1.204e-2149.46Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YARLI1.246e-1847.25Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
COFI_USTMA2.126e-1843.18Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_ZYGRO1.055e-1743.96Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_CANGA2.351e-1744.94Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_YEAST4.010e-1743.82Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_KLULA8.933e-1748.19Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_DEBHA8.933e-1744.32Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_CRYNE1.167e-1645.98Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionDC900327 VSS Citrus sinensis cDNA clone VS28677 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900327 ID=DC900327; Name=DC900327; organism=Citrus sinensis; type=EST; length=510bp
AAAACTTGGTGAGCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTC
CTGCTGAGGAGTGCCGATATGCTGTGTATGATTATGATTTTGTTACCGCA
GAGAACTGCCAAAAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACAC
TGCAAGAGTAAGAAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCA
AGAGAGAGCTAGATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCT
GAGATGGGTCTTGACGTATTTAAAGACCGTGCCAACTAAATAAAGGCTCC
TGATCTCAGCAATTGAGATTGTTTTTATCTTTTGTGCTTTACCTAAAGGT
GAAATGTTAATAGTTTGTGGCGGCAGCTTGAATCTAACTGAATTATGATA
TTGGTTTGTTGTTCAAGTTTCACCGATGCAGTATTCTCGTCTAGAACCAT
TTCAGTGGTCTTTATGATGTCTTTATTGATTTGTTGTGGGGGTGGAAGTT
ATGGGGATGA
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