DC900325
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.190e-15 Identity = 63/192 (32.81%), Postives = 89/192 (46.35%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 682 R++V +RRREGKT+YR R++L+ K R VVR TN+ +IAQIV GD V+ + L +G + L N AAY TG+L+A++ L+ + GE A+LD+GL T G+RVF +PHSD+ S+ I G H+AAY Sbjct: 8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSR-------------IRGEHIAAY 153
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.292e-15 Identity = 51/162 (31.48%), Postives = 75/162 (46.30%), Query Frame = 2 Query: 110 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 595 ++VK++RRRE KTDYR R++L+ K R V R T IAQIV + GD + +A++ EL + G + N +AY TG LL ++ L +G E A+LD+GL + T GN +F IPH ++ Sbjct: 7 YRVKFRRRREAKTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTE------------------AVLDIGLHRATKGNAIFAILKGALDAGMEIPHGEE 135 HSP 2 Score: 30.0314 bits (66), Expect = 6.292e-15 Identity = 10/35 (28.57%), Postives = 24/35 (68.57%), Query Frame = 3 Query: 699 EDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 803 E + E+Y+ F++Y++KG++ + L ++++ A I Sbjct: 157 EQDEERYKKQFSKYLEKGLEPEKLPEHFEEIKAKI 191
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 9.282e-15 Identity = 61/192 (31.77%), Postives = 84/192 (43.75%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 682 R+ V ++RRREG+TDY R +L+ D R VVR TN+ II Q+V+A + GD L +A + EL +YG N AAY TGLL A + K G+D A+LD+GL + T G RVF IP+ + + + G H+AAY Sbjct: 6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.583e-14 Identity = 56/161 (34.78%), Postives = 75/161 (46.58%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHS 589 R++VK++RRREGKTDY R+ L+ K R VVR TN+ II Q + GD V+A A++ EL +YG G N AAY TG L A R K G E A+LD+G +T G+R++ +PHS Sbjct: 6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMRAKK--------AGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHS 133
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 3.527e-14 Identity = 59/196 (30.10%), Postives = 86/196 (43.88%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD +A+A++ +L YG N AAY TGLL +R + D VE A+LD+GL T G++VF +PH+D A +S+ G H+A Y +L Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL 155
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 3.527e-14 Identity = 59/196 (30.10%), Postives = 86/196 (43.88%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD +A+A++ +L YG N AAY TGLL +R + D VE A+LD+GL T G++VF +PH+D A +S+ G H+A Y +L Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL 155
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 4.607e-14 Identity = 56/162 (34.57%), Postives = 75/162 (46.30%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 592 R+ V ++RR EGKTDY R+ L++ TP R VVR TN+ II Q+V + GDS L AAY+ EL YG E + AAY TG+L A V+A Y A+LD+GL + G RVF +P+ + Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 7.858e-14 Identity = 60/195 (30.77%), Postives = 86/195 (44.10%), Query Frame = 2 Query: 110 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694 ++V ++RRREGKTDY AR++L++ DK+ R VVR +N Q++ GD LA+A + +L YG G +N +A Y TG L A+R L A G D A+LD+GL G++VF IP+ + S+ I G HVA Y +L Sbjct: 7 YKVPFRRRREGKTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGEAVLPDESR-------------INGEHVANYAESL 155
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 7.858e-14 Identity = 55/170 (32.35%), Postives = 77/170 (45.29%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSK 616 R++V +RRRE +TDY R+RL+ K R V R +NK + AQ+V+ GD LA+A++ +L YG E N +AY TGLL R E VE A+LD+GL T G++VF IPH+D A + + Sbjct: 6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR 142
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.026e-13 Identity = 64/214 (29.91%), Postives = 93/214 (43.46%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMGG*AREVSISLHRVHQE 748 R+ V ++RRREGKTDY R +LI ++ R VVR TN+ II Q++ A + GD L A + EL YG + +N AAY TG+L A V+A D+ PA A+LD+GL + T G +VF +PH ++ + + G H+AAY G V + + +E Sbjct: 6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEEILPADER-------------VKGEHIAAYAPDRAGDLVENVESAAQTIMKE 173 The following BLAST results are available for this feature:
BLAST of DC900325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900325 ID=DC900325; Name=DC900325; organism=Citrus sinensis; type=EST; length=1150bpback to top |