DC900325

Overview
NameDC900325
Unique NameDC900325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1150
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.190e-15
Identity = 63/192 (32.81%), Postives = 89/192 (46.35%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 682
            R++V  +RRREGKT+YR R++L+   K        R VVR TN+ +IAQIV     GD V+    +  L  +G +  L N  AAY TG+L+A++ L+            +  GE              A+LD+GL   T G+RVF            +PHSD+     S+             I G H+AAY
Sbjct:    8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSR-------------IRGEHIAAY 153          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.292e-15
Identity = 51/162 (31.48%), Postives = 75/162 (46.30%), Query Frame = 2
Query:  110 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 595
            ++VK++RRRE KTDYR R++L+   K        R V R T    IAQIV  +  GD  + +A++ EL + G +    N  +AY TG LL ++ L         +G  E                  A+LD+GL + T GN +F            IPH ++
Sbjct:    7 YRVKFRRRREAKTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTE------------------AVLDIGLHRATKGNAIFAILKGALDAGMEIPHGEE 135          

HSP 2 Score: 30.0314 bits (66), Expect = 6.292e-15
Identity = 10/35 (28.57%), Postives = 24/35 (68.57%), Query Frame = 3
Query:  699 EDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 803
            E + E+Y+  F++Y++KG++ + L   ++++ A I
Sbjct:  157 EQDEERYKKQFSKYLEKGLEPEKLPEHFEEIKAKI 191          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.282e-15
Identity = 61/192 (31.77%), Postives = 84/192 (43.75%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 682
            R+ V ++RRREG+TDY  R +L+  D         R VVR TN+ II Q+V+A + GD  L +A + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF            IP+ +       +             + G H+AAY
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.583e-14
Identity = 56/161 (34.78%), Postives = 75/161 (46.58%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHS 589
            R++VK++RRREGKTDY  R+ L+   K        R VVR TN+ II Q +     GD V+A A++ EL +YG   G  N  AAY TG L A R  K         G  E                  A+LD+G   +T G+R++            +PHS
Sbjct:    6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMRAKK--------AGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHS 133          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 3.527e-14
Identity = 59/196 (30.10%), Postives = 86/196 (43.88%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +S+               G H+A Y  +L
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL 155          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.527e-14
Identity = 59/196 (30.10%), Postives = 86/196 (43.88%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF            +PH+D   A +S+               G H+A Y  +L
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSR-------------TRGEHIAEYAESL 155          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.607e-14
Identity = 56/162 (34.57%), Postives = 75/162 (46.30%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 592
            R+ V ++RR EGKTDY  R+ L++       TP  R VVR TN+ II Q+V   + GDS L AAY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF            +P+ +
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.858e-14
Identity = 60/195 (30.77%), Postives = 86/195 (44.10%), Query Frame = 2
Query:  110 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694
            ++V ++RRREGKTDY AR++L++ DK+       R VVR +N     Q++     GD  LA+A + +L  YG   G +N +A Y TG L A+R L              A G D             A+LD+GL     G++VF            IP+ +      S+             I G HVA Y  +L
Sbjct:    7 YKVPFRRRREGKTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGEAVLPDESR-------------INGEHVANYAESL 155          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 7.858e-14
Identity = 55/170 (32.35%), Postives = 77/170 (45.29%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSK 616
            R++V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+V+    GD  LA+A++ +L  YG E    N  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF            IPH+D   A + +
Sbjct:    6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQR 142          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.026e-13
Identity = 64/214 (29.91%), Postives = 93/214 (43.46%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMGG*AREVSISLHRVHQE 748
            R+ V ++RRREGKTDY  R +LI  ++        R VVR TN+ II Q++ A + GD  L  A + EL  YG +   +N  AAY TG+L A                V+A   D+   PA       A+LD+GL + T G +VF            +PH ++      +             + G H+AAY     G     V  +   + +E
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEEILPADER-------------VKGEHIAAYAPDRAGDLVENVESAAQTIMKE 173          
The following BLAST results are available for this feature:
BLAST of DC900325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL18_ARCFU3.190e-1532.8150S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]
RL18_METJA6.292e-1531.4850S ribosomal protein L18P OS=Methanocaldococcus j... [more]
RL18_METB69.282e-1531.7750S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_KORCO1.583e-1434.7850S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]
RL18_HALSA3.527e-1430.1050S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_HALS33.527e-1430.1050S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_METMJ4.607e-1434.5750S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_METS37.858e-1430.7750S ribosomal protein L18P OS=Methanobrevibacter s... [more]
RL18_HALMA7.858e-1432.3550S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL18_METPE1.026e-1329.9150S ribosomal protein L18P OS=Methanosphaerula pal... [more]

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Properties
Property NameValue
Genbank descriptionDC900325 VSS Citrus sinensis cDNA clone VS28675 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900325 ID=DC900325; Name=DC900325; organism=Citrus sinensis; type=EST; length=1150bp
CTCGTGCCGAATTCGGCACGAGCTCCTTCCCTCTCCTTTCTCTTACAACT
CGAAAGTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTAC
TTCAAGCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGA
TTACAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACA
CACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCA
CAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTA
TGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATG
CTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATG
CTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGAGAGGA
TTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTG
ATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTGCTCTG
AAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTT
TGCTGGTTTTTCGAAGGATGGCAAGCAGCTGGATGCTGAGGTTCACCGCA
AGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGGA
GGATGAGCCAGAGAAGTATCAATCTCACTTCACCGAGTACATCAAGAAAG
GAATTGATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATGCTGCC
ATTCGTGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCTCCCAAAGA
ACATAAGAGGTATAATTTGAAGAAGCTTACTTACGAGGAAAGGAAGGCGA
AGCTGGTTGAAAGGCTGAATGCCCTTAACTCGGCAGTTGATGAGGAGGAC
GAATGAAAGCATCATAACTAGATATGAATTCAAAATATGTGGCAAATCTG
CAGTACACATTTGTTGTTGCAGTTGCTAGAACCTAAAAATGTTTCTTTGC
CCAGTTTTTATTTTTATTTTTATTTTTAATCATCTTCTGTTTTGGCAATT
TTGCAGCTTGGATTTCTCATTAGATAACAAGGTTTTGAGATTTTTAGCTT
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