DC900325
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.935e-12 Identity = 53/145 (36.55%), Postives = 71/145 (48.97%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVF 541 R+ V+++RRREG+TDY R RLI +N R VVR TN+ II Q+++A + GD L + EL +G + L N AAY TG+L A R K YEG + D+GL +TG RVF Sbjct: 6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQKA-----GYEGGI---------------------ADIGLQVASTGARVF 117
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.935e-12 Identity = 56/192 (29.17%), Postives = 81/192 (42.19%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 682 R++V +RRRE +TDY R+RL+ K R V R +N+ + AQ+++ GD AA + L YG E N +AY TG L R ++ G D A+LD+GL T GN+VF IPH++ A +S++ G H+AAY Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRN-------------RGEHIAAY 151
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.935e-12 Identity = 59/196 (30.10%), Postives = 80/196 (40.82%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694 R++V +RRRE +TDY R+RL+ K R V R +N + AQ+V+ GD AAA + EL YG + N +AY TG L R + G D A+LD+GL T GN+ F IPH+D A +S+ G H+AAY L Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARAVD--------------AGLD------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSR-------------TRGEHIAAYAEQL 155
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.528e-12 Identity = 54/166 (32.53%), Postives = 78/166 (46.99%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFA 604 +F+V ++RRREGKTD+R R+ L+ K R V R + ++ AQ++S + GD VL +A+ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH D+ A Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA 138
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.528e-12 Identity = 55/168 (32.74%), Postives = 76/168 (45.24%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAG 607 R++V +RRREGKT+Y R RL+ K R VR +N+ + Q + A I GD V+AAA++ EL ++G + N AAY TG L R L+ + A+LDVGL K G+RVF IPHS++ G Sbjct: 6 RYRVPLRRRREGKTNYYRRFRLVKSGKP-------RMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPG 140
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 3.301e-12 Identity = 65/201 (32.34%), Postives = 86/201 (42.79%), Query Frame = 2 Query: 95 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694 A+ ++VKY+RRREGKT+Y R + + R VVR TNK IIAQI N GD ++ AA++ EL ++G + L N AAY TG LL R LK G E A+ D+GL G+R+F IP D G +D I G H+A+Y L Sbjct: 2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVGD---LGIKED-----------RIKGVHIASYAQKL 155
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 4.312e-12 Identity = 60/193 (31.09%), Postives = 88/193 (45.60%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 682 R++V ++RRREGKTDY R++LI + K R VVR T+ +IAQI+ GD VLAAA + EL + +G + N +AAY TGLL+ + E VE A+LD+GL + G+RV+ +P S+ F D + ++I G + Y Sbjct: 6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVFPS--------DDRIRGEHIAGNTASKY 157
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 4.312e-12 Identity = 62/205 (30.24%), Postives = 97/205 (47.32%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTD-YRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD-----------KRFAGFSKDGKQLDAEVHR----KYIYGG 667 R++VK++RRREGKTD Y+ RI +I + K R VVRF+N+ ++AQ++ + GD +A A + EL ++G G N AAY GLL+ R L K +++ A+LDVGL + T G R+F +PH + + A ++ D KQ + E+++ KY+ G Sbjct: 6 RYKVKFRRRREGKTDYYKRRIMVI--------SGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDEEVQPSEDRLNGEHIAQYAADLKQSNPELYKIRFSKYLARG 175
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 7.351e-12 Identity = 57/201 (28.36%), Postives = 85/201 (42.29%), Query Frame = 2 Query: 95 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694 A+ R++V ++RRREGKT+Y R+ L+ K R VVR T +AQIV GD + +A+ EL R +G + N +AY GLL+ + L E +E A+LD+GL T G+ +F +PHS++ + G + I G H+A Y L Sbjct: 2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAL---------EKGIE-----------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG-------------EERINGKHIAEYAKML 156 HSP 2 Score: 25.409 bits (54), Expect = 7.351e-12 Identity = 10/35 (28.57%), Postives = 21/35 (60.00%), Query Frame = 3 Query: 699 EDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 803 +++ E Y+ F Y+ KG++ + L +++V A I Sbjct: 157 KEDDENYKKQFGGYLVKGLEPEKLPEHFEEVKARI 191
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 7.355e-12 Identity = 53/166 (31.93%), Postives = 77/166 (46.39%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFA 604 +F+V ++RRREGKTD+R R+ L+ K R V R + ++ AQ+++ + GD VL +A++ EL + G + N AAY TGLLL + +K ED A+LD GL + T G +F IPH DK A Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIA 138 The following BLAST results are available for this feature:
BLAST of DC900325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900325 ID=DC900325; Name=DC900325; organism=Citrus sinensis; type=EST; length=1150bpback to top |