DC900325
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_THEON (50S ribosomal protein L18P OS=Thermococcus onnurineus (strain NA1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 9.546e-12 Identity = 57/198 (28.79%), Postives = 85/198 (42.93%), Query Frame = 2 Query: 95 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD-----------KRFAGFSKDGKQLDAEVHRK 652 A+ R++V ++RRREGKT+Y R+ L+ K R VVR + IAQIV + GD + +A+ EL R +G + N +AY GLL+ + K G D A+LD+GL T G+ VF +PHS+ + A ++K K+ D +RK Sbjct: 2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKSLNHHIAQIVVYDPKGDKTIVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAKK--------------AGID------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIYPEDYRITGEHIANYAKALKEEDEGKYRK 166 HSP 2 Score: 28.1054 bits (61), Expect = 9.546e-12 Identity = 11/35 (31.43%), Postives = 22/35 (62.86%), Query Frame = 3 Query: 699 EDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 803 E++ KY+ F+ Y+ KG++ + L +++V A I Sbjct: 158 EEDEGKYRKQFSSYLVKGLEPEKLPEHFEEVKARI 192
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 9.606e-12 Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLK 397 R++V +RRREGKT+Y R +++ RFVVR T K II QIV+A GD +AAA++ EL +YG GL N AAY TGLL A R LK Sbjct: 6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK 96
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.140e-11 Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIK 517 R++V +RRREGKT+Y R R+I RF+VR T I Q+ +A GD ++AAA+++EL R+G + G N +AAY TGLL A R L+ G +Y+V RP + L IK Sbjct: 6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAALRALE--------------KGVEYAVPDIGLHRPVKGALVFAAIK 122
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 2.711e-11 Identity = 58/197 (29.44%), Postives = 80/197 (40.61%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694 R++V +RRREGKT+Y R + K RFVVR +NK + Q++ GD V+AAA++ EL +YG + + A Y TG+L A R K G Y+V D+GL K T G RVF +P D I G H+A+Y +L Sbjct: 6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVG--------------DVVPDESRIRGEHIASYAESL 155 HSP 2 Score: 27.7202 bits (60), Expect = 2.711e-11 Identity = 14/47 (29.79%), Postives = 26/47 (55.32%), Query Frame = 3 Query: 702 DEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPA 842 + PE+YQ F + +++G+ + +++V A I D K E+PA Sbjct: 158 ENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED---YKVEQPA 201
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.795e-11 Identity = 61/196 (31.12%), Postives = 83/196 (42.35%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694 R++V ++RRREG T+YR R RLI K R VVR TNK IIAQ+V A GD + L ++G N +AAY GL+ Y+ + E A+LD+GL + G+RVF IPH G+++ E R + G HVA Y + L Sbjct: 6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPH-----------GEEVLPEDDR--VSGKHVAEYAAKL 155
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 4.767e-11 Identity = 59/201 (29.35%), Postives = 92/201 (45.77%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRF-----------AGFSKDGKQLDAEVHRKYIYGGHV 673 R++V ++RRREGKT+Y R++L+ + K R VVR + IAQI+ N GD + +A+ EL R +G + N +AY GLL+ + K +E A+LD+GL T G+ VF +PHS++ F A ++K KQ D ++RK +GG++ Sbjct: 6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIFPEDYRIRGEHVAEYAKALKQEDETLYRKQ-FGGYL 172
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 6.226e-11 Identity = 54/173 (31.21%), Postives = 75/173 (43.35%), Query Frame = 2 Query: 107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPH------SDKRFAG 607 R++V ++RRREG T+YR R +L+ K R VVR TNK IIAQ+V A GD + L ++G + N AAY GL++ Y+ + E A+LD+GL + G+RVF IPH SD R +G Sbjct: 6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDRISG 145 The following BLAST results are available for this feature:
BLAST of DC900325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900325 ID=DC900325; Name=DC900325; organism=Citrus sinensis; type=EST; length=1150bpback to top |