DC900325

Overview
NameDC900325
Unique NameDC900325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1150
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_THEON (50S ribosomal protein L18P OS=Thermococcus onnurineus (strain NA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 9.546e-12
Identity = 57/198 (28.79%), Postives = 85/198 (42.93%), Query Frame = 2
Query:   95 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD-----------KRFAGFSKDGKQLDAEVHRK 652
            A+  R++V ++RRREGKT+Y  R+ L+   K        R VVR +    IAQIV  +  GD  + +A+  EL R +G +    N  +AY  GLL+  +  K               G D             A+LD+GL   T G+ VF            +PHS+           +  A ++K  K+ D   +RK
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKSLNHHIAQIVVYDPKGDKTIVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAKK--------------AGID------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIYPEDYRITGEHIANYAKALKEEDEGKYRK 166          

HSP 2 Score: 28.1054 bits (61), Expect = 9.546e-12
Identity = 11/35 (31.43%), Postives = 22/35 (62.86%), Query Frame = 3
Query:  699 EDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAI 803
            E++  KY+  F+ Y+ KG++ + L   +++V A I
Sbjct:  158 EEDEGKYRKQFSSYLVKGLEPEKLPEHFEEVKARI 192          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.606e-12
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLK 397
            R++V  +RRREGKT+Y  R +++            RFVVR T K II QIV+A   GD  +AAA++ EL  +YG   GL N  AAY TGLL A R LK
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK 96          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.140e-11
Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIK 517
            R++V  +RRREGKT+Y  R R+I            RF+VR T   I  Q+ +A   GD ++AAA+++EL  R+G + G  N +AAY TGLL A R L+               G +Y+V      RP +  L    IK
Sbjct:    6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAALRALE--------------KGVEYAVPDIGLHRPVKGALVFAAIK 122          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.711e-11
Identity = 58/197 (29.44%), Postives = 80/197 (40.61%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694
            R++V  +RRREGKT+Y  R  +    K        RFVVR +NK +  Q++     GD V+AAA++ EL  +YG +    +  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF            +P                D       I G H+A+Y  +L
Sbjct:    6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVG--------------DVVPDESRIRGEHIASYAESL 155          

HSP 2 Score: 27.7202 bits (60), Expect = 2.711e-11
Identity = 14/47 (29.79%), Postives = 26/47 (55.32%), Query Frame = 3
Query:  702 DEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPA 842
            + PE+YQ  F + +++G+  +     +++V A I  D    K E+PA
Sbjct:  158 ENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED---YKVEQPA 201          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.795e-11
Identity = 61/196 (31.12%), Postives = 83/196 (42.35%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 694
            R++V ++RRREG T+YR R RLI   K        R VVR TNK IIAQ+V A   GD  +       L ++G      N +AAY  GL+              Y+  +    E              A+LD+GL +   G+RVF            IPH           G+++  E  R  + G HVA Y + L
Sbjct:    6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPH-----------GEEVLPEDDR--VSGKHVAEYAAKL 155          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.767e-11
Identity = 59/201 (29.35%), Postives = 92/201 (45.77%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRF-----------AGFSKDGKQLDAEVHRKYIYGGHV 673
            R++V ++RRREGKT+Y  R++L+        + K R VVR +    IAQI+  N  GD  + +A+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL   T G+ VF            +PHS++ F           A ++K  KQ D  ++RK  +GG++
Sbjct:    6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIFPEDYRIRGEHVAEYAKALKQEDETLYRKQ-FGGYL 172          
BLAST of DC900325 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.226e-11
Identity = 54/173 (31.21%), Postives = 75/173 (43.35%), Query Frame = 2
Query:  107 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPH------SDKRFAG 607
            R++V ++RRREG T+YR R +L+   K        R VVR TNK IIAQ+V A   GD  +       L ++G +    N  AAY  GL++             Y+  +    E              A+LD+GL +   G+RVF            IPH      SD R +G
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDRISG 145          
The following BLAST results are available for this feature:
BLAST of DC900325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL18_THEON9.546e-1228.7950S ribosomal protein L18P OS=Thermococcus onnurin... [more]
RL18_STAMF9.606e-1247.9650S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_DESK12.140e-1136.2350S ribosomal protein L18P OS=Desulfurococcus kamc... [more]
RL18_IGNH42.711e-1129.4450S ribosomal protein L18P OS=Ignicoccus hospitali... [more]
RL18_THENV2.795e-1131.1250S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_THEGJ4.767e-1129.3550S ribosomal protein L18P OS=Thermococcus gammato... [more]
RL18_PYRIL6.226e-1131.2150S ribosomal protein L18P OS=Pyrobaculum islandic... [more]

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Properties
Property NameValue
Genbank descriptionDC900325 VSS Citrus sinensis cDNA clone VS28675 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900325 ID=DC900325; Name=DC900325; organism=Citrus sinensis; type=EST; length=1150bp
CTCGTGCCGAATTCGGCACGAGCTCCTTCCCTCTCCTTTCTCTTACAACT
CGAAAGTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTAC
TTCAAGCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGA
TTACAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACA
CACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCA
CAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTA
TGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATG
CTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATG
CTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGAGAGGA
TTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTG
ATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTGCTCTG
AAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTT
TGCTGGTTTTTCGAAGGATGGCAAGCAGCTGGATGCTGAGGTTCACCGCA
AGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGGA
GGATGAGCCAGAGAAGTATCAATCTCACTTCACCGAGTACATCAAGAAAG
GAATTGATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATGCTGCC
ATTCGTGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCTCCCAAAGA
ACATAAGAGGTATAATTTGAAGAAGCTTACTTACGAGGAAAGGAAGGCGA
AGCTGGTTGAAAGGCTGAATGCCCTTAACTCGGCAGTTGATGAGGAGGAC
GAATGAAAGCATCATAACTAGATATGAATTCAAAATATGTGGCAAATCTG
CAGTACACATTTGTTGTTGCAGTTGCTAGAACCTAAAAATGTTTCTTTGC
CCAGTTTTTATTTTTATTTTTATTTTTAATCATCTTCTGTTTTGGCAATT
TTGCAGCTTGGATTTCTCATTAGATAACAAGGTTTTGAGATTTTTAGCTT
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