CX043694

Overview
NameCX043694
Unique NameCX043694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043694 vs. ExPASy Swiss-Prot
Match: RIO1_ARCFU (RIO-type serine/threonine-protein kinase Rio1 OS=Archaeoglobus fulgidus GN=rio1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.952e-23
Identity = 63/185 (34.05%), Postives = 93/185 (50.27%), Query Frame = 2 
Query:   86 KTKTSEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKS-DGQE--LAVKVYFTSILVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAAPRLKDAALSLDKFT*RLC*DDNCNADIISEVQNLCMETSV 631
            + K  +  +R    + +D RT   L+K+  +G    + G ISTGKEANV++A    DG+   +AVK+Y      F   D Y+ GD RF     + +P++ V  W EKE RNL R K AG+  P PY    +VL+MEFIG+    AP L +    L +        +    D++  V+ L  E  +
Sbjct:   15 RIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMR--RISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRELKELD-----VEGIFNDVVENVKRLYQEAEL 192

HSP 2 Score: 30.8018 bits (68), Expect = 4.952e-23
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 1 
Query:  604 AKLVHGDLSEYNILYFE 654
            A+LVH DLSEYNI+Y +
Sbjct:  190 AELVHADLSEYNIMYID 206
[Close]
BLAST of CX043694 vs. ExPASy Swiss-Prot
Match: RIO1_METJA (RIO-type serine/threonine-protein kinase Rio1 OS=Methanocaldococcus jannaschii GN=rio1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.620e-20
Identity = 56/139 (40.29%), Postives = 74/139 (53.24%), Query Frame = 2 
Query:  110 DRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQELAVKVYFTSILVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAAPRLKD 526
            D  T  +  D RT M LF +L      +  G +++GKEA V+ A K      AVKVY  +   FK   +Y+QGD RF     K + R+++  W EKE RNL R     I  P   L R +VLVM+F+G  G  AP+LKD
Sbjct:   50 DLKTANEVFDKRTLMTLFSLLAGKHLTEYIGIVNSGKEAVVFKARKGKFYR-AVKVYRVATCDFKTMSKYIQGDPRFHLR--KSSRRQIIHAWVEKEFRNLRRASEI-INAPKARLRRENVLVMDFVGYRGIPAPKLKD 184

HSP 2 Score: 28.8758 bits (63), Expect = 4.620e-20
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  607 KLVHGDLSEYNIL 645
            +LVHGDLSEYNIL
Sbjct:  209 ELVHGDLSEYNIL 221
The following BLAST results are available for this feature:
BLAST of CX043694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RIO1_ARCFU4.952e-2334.05RIO-type serine/threonine-protein kinase Rio1 OS=A... [more]
RIO1_METJA4.620e-2040.29RIO-type serine/threonine-protein kinase Rio1 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12H02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12H02-O4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043694 ID=CX043694; Name=CX043694; organism=Citrus sinensis; type=EST; length=658bp
GGAATGGGAGGGGAGGATGAATGTTGGCATGTCGAATTCTGTGACAACTG
CAATCCGTGAAAGTGTCCGAGACATGGCCATTGGTAAAACTAAAACCTCT
GAGAAAGCAGATCGTGCGACTGTTGAACAGGCTATTGACCCTAGGACTCG
TATGGTTTTATTCAAAATGCTGAATCGGGGTGTATTCCATGATATCAATG
GCTGCATTTCTACGGGAAAAGAAGCCAACGTTTATCATGCAACAAAATCT
GATGGTCAAGAACTAGCTGTCAAAGTGTACTTTACTTCCATTCTGGTTTT
TAAGGACCGAGATCGGTATGTCCAAGGTGACTATCGTTTCAGATATGGAT
ACTGCAAGCACAATCCAAGGAAAATGGTGAAAACTTGGGCTGAAAAAGAA
ATGAGGAATCTTATGAGACTGAAGGCAGCTGGAATTAGGTGCCCAACTCC
ATATCTTTTGAGACTTCATGTTCTGGTTATGGAATTTATAGGAAAGGCAG
GGTGGGCTGCTCCTCGTCTTAAGGATGCTGCTTTATCTTTGGACAAGTTT
ACGTGAAGGTTATGTTGAGATGATAATTGCAATGCGGACATTATATCAGA
GGTGCAAAACTTGTGCATGGAGACCTCAGTGAATATAACATACTTTATTT
TGAGGGTC
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