CX043681

Overview
NameCX043681
Unique NameCX043681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3595 contig Csv1_Contig3595:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 72/212 (33.96%), Postives = 125/212 (58.96%), Query Frame = 3
Query:   12 LVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSS-DLNLP 644
            L +Q +   + +G     V     I+ +++L  ++  ++   F N  LF + +   FE F N     S S E L+ F D+ LKKG  + L ++ +E  L+K + L  ++ +KD+F  +Y++ LARRLL ++S +DD E+++++KLK +CG QFTSK+EGM  D++++      F ++L     +  G+DL+V VLTTG+WP+  ++   N+P
Sbjct:  321 LREQGKALVSEEGEGKNPVD---YIQGLLDLKSRFDRFLQESFSNDRLFKQTIAGDFEYFLNL---NSRSPEYLSLFIDDKLKKGV-KGLTEQEVESILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQTTGVSLGGVDLTVRVLTTGYWPTQSATPKCNIP 525          
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.221e-30
Identity = 72/212 (33.96%), Postives = 125/212 (58.96%), Query Frame = 3
Query:   12 LVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSS-DLNLP 644
            L +Q +   + +G     V     I+ +++L  ++  ++   F N  LF + +   FE F N     S S E L+ F D+ LKKG  + L ++ +E  L+K + L  ++ +KD+F  +Y++ LARRLL ++S +DD E+++++KLK +CG QFTSK+EGM  D++++      F ++L     +  G+DL+V VLTTG+WP+  ++   N+P
Sbjct:  321 LREQGKALVSEEGEGKNPVD---YIQGLLDLKSRFDRFLQESFNNDRLFKQTIAGDFEYFLNL---NSRSPEYLSLFIDDKLKKGV-KGLTEQEVETILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQATGVSLGGVDLTVRVLTTGYWPTQSATPKCNIP 525          
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.221e-30
Identity = 72/212 (33.96%), Postives = 125/212 (58.96%), Query Frame = 3
Query:   12 LVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSS-DLNLP 644
            L +Q +   + +G     V     I+ +++L  ++  ++   F N  LF + +   FE F N     S S E L+ F D+ LKKG  + L ++ +E  L+K + L  ++ +KD+F  +Y++ LARRLL ++S +DD E+++++KLK +CG QFTSK+EGM  D++++      F ++L     +  G+DL+V VLTTG+WP+  ++   N+P
Sbjct:  321 LREQGKALVSEEGEGKNPVD---YIQGLLDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNL---NSRSPEYLSLFIDDKLKKGV-KGLTEQEVETILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQATGVSLGGVDLTVRVLTTGYWPTQSATPKCNIP 525          
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.176e-30
Identity = 79/220 (35.91%), Postives = 123/220 (55.91%), Query Frame = 3
Query:   15 VQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNK------AVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWP-SYKSSDLNLPSEM 653
            VQ     A +   ++G ++ +V I  ++++  KY E VT  F + T F  +L +A   F N+      A   S S ELLA F D +LKK  N     E +E+ L  V+ +  YI DKD+F +FY K LA+RL+   S ++D E +++ KLK  CG ++TSK++ M TD++L+RE    F  ++   + +   ID SV VL TG WP    S++ ++P E+
Sbjct:  335 VQNVGLQAVSSIATNGVIEPKVYIETLLKVFKKYNELVTGAFRSDTGFVASLDKACRRFINENAVTIAAKSSSKSPELLARFTDFLLKKSPNNPEESE-MEQLLNDVMIVFKYIEDKDVFQDFYSKMLAKRLIHGTSTSEDLEGTMIGKLKSTCGYEYTSKLQRMFTDMSLSRELLDRFNNHIEQVERSSLNIDFSVLVLATGSWPLQPPSTNFSIPKEL 553          
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL1_DROME (Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.727e-29
Identity = 75/219 (34.25%), Postives = 123/219 (56.16%), Query Frame = 3
Query:   12 LVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAV-----GGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEM 653
            ++ Q  +A      +  A   +  ++ I+++H KY   V   F N   F  AL +A   F N  V       S S ELLA +CD +LKK       D+ +E+ L +V+ +  YI DKD+F ++Y K LA+RL+   SA+DD E  +++KLKQ CG ++T K++ M  D+ ++++  + F++YL+  +N    ID  + VL++G WP   S++  LPSE+
Sbjct:  343 ILHQGTEAIAKCCTTDAANDPKTYVQTILDVHKKYNALVLTAFNNDNGFVAALDKACGKFINSNVVTIANSASKSPELLAKYCDLLLKKSSKNPE-DKELEDNLNQVMVVFKYIEDKDVFQKYYSKMLAKRLVNHTSASDDAEAMMISKLKQTCGYEYTVKLQRMFQDIGVSKDLNSYFKQYLA-EKNLTMEIDFGIEVLSSGSWPFQLSNNFLLPSEL 559          
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.552e-27
Identity = 69/197 (35.03%), Postives = 115/197 (58.38%), Query Frame = 3
Query:   69 QEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVK 659
            +E  LI+ +++  D+    ++  F  + L   ALKE+FE F N     +  +EL+A F D+ LK GG +++ +E +E  L K + L  YI  KD+F  FY++ L++RLL D+S + D E+S+++KLK +CG  FT+K+E M  D+ L+ +   SF +  S        I++++ VLT+G WP     +  LP E ++
Sbjct:  366 KEATLIQDLLDYKDRLDRILSQSFSKNELLTYALKESFEYFINTKQ--NKPAELVARFIDSKLKVGG-KRMSEEELETVLNKSLILFRYIQGKDVFEAFYKQDLSKRLLLDKSTSIDAEKSMISKLKTECGTTFTAKLEEMFKDIELSNDIMNSFRD--SPMTQNFKSIEMNIYVLTSGNWPIQPPIEATLPKEFLE 557          
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL1_CAEEL (Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 64/209 (30.62%), Postives = 122/209 (58.37%), Query Frame = 3
Query:   63 AVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGG---------SSSSELLATFCDNILKKGGNEKLIDEA-IEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVK 659
            A   ++ ++ ++E+H++Y   V   F N   F ++L +A   F N              + S+ELLA +CD +L+K  + K+ DEA +EE   K++ +  YI DKD+F++FY K  ++RL+ + SA+D+ E + +TKLK  CG ++T+++  MV D  ++++    F+E  + +      ++ +V VL++G WP++ ++ + LP ++ K
Sbjct:  361 ATDAKLYVKTLLEVHERYQSLVNRSFKNEPGFMQSLDKAATSFINNNAVTKRAPPQAQLTKSAELLARYCDQLLRK--SSKMPDEAELEELQTKIMVVFKYIDDKDVFSKFYTKMFSKRLISELSASDEAEANFITKLKSMCGYEYTARLSKMVNDTQVSKDLTADFKEKKA-DMLGQKSVEFNVLVLSSGSWPTFPTTPITLPQQLSK 566          
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.211e-26
Identity = 68/210 (32.38%), Postives = 116/210 (55.24%), Query Frame = 3
Query:   42 NQGGSSGAVQEQVL------IRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEM 653
            N+ GS+    E +L      + ++++L D +   +T  F +   F    +  FE F N       S E +A + D++L+ G  + + D  ++  L+ V+ L  Y+ +KD+F +++++ LA+RLL D+S +DD E+++L KLK +CG QFT K+E M  D  L     TSF ++    Q     ID+S+ VLT G WP+ + + + LP E+
Sbjct:  328 NETGSNIVKNEDLLKNPVNFVNELLQLKDYFSSLLTTAFADDRDFKNRFQHDFETFLNS---NRQSPEFVALYMDDMLRSG-LKCVSDAEMDNKLDNVMILFRYLQEKDVFEKYFKQYLAKRLLLDKSCSDDVEKALLAKLKTECGCQFTQKLENMFRDKELWLTLATSFRDW-REAQPTKMSIDISLRVLTAGVWPTVQCNPVVLPQEL 532          
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL2_DICDI (Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.072e-25
Identity = 66/197 (33.50%), Postives = 112/197 (56.85%), Query Frame = 3
Query:   75 QVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNK---AVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSY-KSSDLNLPSEM 653
            ++ +  +++++ ++   +   F N   F   L  A     N+       + S ELLA +CD +LKKG N++  +  +EE L +++ L  Y+ DKD+F +FY K L+RRL+   S +DD E+ ++T LKQ CG ++TSK + M  D+TL+ E    F+ +L  N  +   ID S+ VLT+G W  + ++S   +P E+
Sbjct:  330 KIYVETLLKIYLQFSSIIKKSFNNDVSFITVLDLACHKIFNQNHITRNTTKSPELLAKYCDMLLKKG-NKQHEEIELEEKLGQIIVLFKYVDDKDVFQKFYSKMLSRRLINGTSVSDDIEKFMITGLKQACGFEYTSKFQRMFNDITLSAETNEEFKNHLIKNSLSIGKIDFSILVLTSGSWSLHSQTSSFIVPQEL 525          
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL1_SCHPO (Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25
Identity = 73/209 (34.93%), Postives = 112/209 (53.59%), Query Frame = 3
Query:   45 QGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAV----GGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWP-SYKSSDLNLPSEMV 656
            Q G    V  +  +  ++  +    E V   F   T F K+L  AF    N+ V      S S ELLA + D+IL+K      ID+ +E+ L  ++ +  Y+ DKD+F  FY K LA+RL+   S + D E S+L+KLK+ CG ++TSK++ M  D++L++E   +F +     Q+    ID S  VL T FWP S  + + +LP E+V
Sbjct:  351 QVGGEADVDPKEYMEMLLSTYKASKELVNTAFHGDTDFTKSLDTAFRELVNRNVVCQRSSSRSPELLAKYADSILRKSNKNVDIDD-VEDCLSSIIIIFRYVEDKDVFQNFYTKLLAKRLVNGTSNSQDAESSMLSKLKEVCGFEYTSKLQRMFQDISLSQEITEAFWQL---PQSRAGNIDFSALVLGTSFWPLSPNNVNFHLPEELV 555          
The following BLAST results are available for this feature:
BLAST of CX043681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
CUL3A_XENLA1.107e-3033.96Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_MOUSE3.221e-3033.96Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]
CUL3_HUMAN3.221e-3033.96Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]
CUL1_DICDI7.176e-3035.91Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]
CUL1_DROME2.727e-2934.25Cullin homolog 1 OS=Drosophila melanogaster GN=lin... [more]
CUL4_DICDI2.552e-2735.03Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
CUL1_CAEEL3.334e-2730.62Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 S... [more]
CUL3_CAEEL8.211e-2632.38Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL2_DICDI1.072e-2533.50Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 ... [more]
CUL1_SCHPO2.389e-2534.93Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12G06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G06-M12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043681 ID=CX043681; Name=CX043681; organism=Citrus sinensis; type=EST; length=659bp
AAGGTACTGTGTTGGTACAACAGGCTGAAGATGCTGCAACAAACCAGGGT
GGAAGTTCAGGTGCTGTGCAGGAACAGGTCCTTATCAGAAAAATAATTGA
GCTGCATGACAAGTATATGGAATACGTGACTAATTGTTTCATAAACCACA
CGTTGTTCCACAAGGCTCTGAAAGAGGCTTTTGAGATATTTTGCAATAAA
GCTGTTGGTGGCAGTTCGAGTTCAGAACTGCTGGCAACTTTTTGTGATAA
TATCCTAAAGAAGGGTGGAAATGAGAAACTGATTGATGAAGCCATTGAAG
AAACTCTGGAGAAGGTTGTTAAGCTGCTTGCATATATCAGTGATAAAGAT
CTTTTTGCCGAATTCTACAGGAAGAAGCTTGCTCGTCGGCTGCTTTTTGA
TCGTAGTGCTAATGATGATCATGAAAGGAGTATTCTCACAAAGCTGAAGC
AGCAGTGTGGTGGACAGTTTACATCGAAGATGGAGGGAATGGTTACAGAT
TTGACTTTGGCAAGAGAAAATCAGACCAGCTTTGAGGAATATCTCAGCAA
TAACCAGAATGCACACCCTGGAATAGATTTATCAGTTACTGTTCTCACTA
CTGGATTTTGGCCAAGTTATAAATCCTCCGATCTGAACCTTCCTTCTGAG
ATGGTTAAA
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