DC900321

Overview
NameDC900321
Unique NameDC900321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900321_ssr1 microsatellite DC900321_ssr1:1..62. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DC900321 vs. ExPASy Swiss-Prot
Match: OPT_SCHPO (Uncharacterized oligopeptide transporter C29B12.10c OS=Schizosaccharomyces pombe GN=SPAC29B12.10c PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.964e-28
Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = 3
Query:  336 YIITPIAYFTNSNNARHFPFSSTRLFDKYGHLYNVSKVVKDTDLTFNSKAYQGYSNLYLSVVYLFALGFEFAAVTASLSHFIAFYGRDAWQQFKQAYVSSNNSTEDVHNRLMKKYKPVPQCWYLAILITAVGLAILSCEAFGDQLQLPYWGILFSCLLILIFVLPLGVLQATTGQ 860
            +I+ PI Y+     + + P  S+  FD  G  YN S+V+ ++D +FN   Y+ YS LY+ + Y  +    FAAVTA  +H   + G+D WQ+  +     +   E +H +LM+ YK  PQ WY  + I   GL I +   +    Q P W ++ + L+ ++  +P GVL+  T Q
Sbjct:  419 WIVVPILYYKGVWFSNYLPMLSSSTFDHTGVSYNSSRVL-NSDYSFNHTKYESYSPLYMPMSYSMSTALNFAAVTAIFTHCALYNGKDIWQRLWK----ESGKDECIHRKLMRNYKEAPQWWYATLFIVVFGLTIFTVRYY--DTQCPVWALIVALLIFIVNFIPQGVLEGITNQ 586          

HSP 2 Score: 32.7278 bits (73), Expect = 9.964e-28
Identity = 19/82 (23.17%), Postives = 30/82 (36.59%), Query Frame = 2
Query:   62 TRAEFGTRAAVTSFAYAIVPGYFFPSLGALFFVXWLXKDSXTAXLIGSXRNGFGIASFALXXNAIXAYSXNPLVYPLSTIIN 307
            +R  F     + SF +   PG+ F  L     + W+   +     +    +G GI         +  Y+ NPL  P   I N
Sbjct:  329 SRYRFFAYVMIGSFVFYWFPGFIFKGLSYFTVLCWIWPKNRVVNQLFGYNSGLGILPLTFDWQQV-VYNSNPLASPWWVICN 409          
BLAST of DC900321 vs. ExPASy Swiss-Prot
Match: OPT1_YEAST (Oligopeptide transporter 1 OS=Saccharomyces cerevisiae GN=OPT1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.860e-22
Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = 3
Query:  339 IITPIAYFTNSNNARHFPFSSTRLFDKYGHLYNVSKVVKDTDLTFNSKAYQGYSNLYLSVVYLFALGFEFAAVTASLSHFIAFYGRDAWQQFKQAYVSSNNSTEDVHNRL-MKKYKPVPQCWYLAILITAVGLAILSCEAFGDQLQLPYWGILFSCLLILIFVLPLGVLQATTGQ 860
            I+ P  YFTN+  A++ P  S   +D   + YNV+K++ + D + N + Y+ YS +++   YL +    FAAV A   H I ++G+D   +FK       N   D+H R+  K YK  P  WYL + I  +GL  ++   F    + P W  + + L+ L+  +P G+L+A T Q
Sbjct:  368 IVLPCLYFTNTWYAKYMPVISGSTYDNTQNKYNVTKILNE-DYSINLEKYKEYSPVFVPFSYLLSYALNFAAVIAVFVHCILYHGKDIVAKFK----DRKNGGTDIHMRIYSKNYKDCPDWWYLLLQIVMIGLGFVAVCCF--DTKFPAWAFVIAILISLVNFIPQGILEAMTNQ 535          

HSP 2 Score: 21.9422 bits (45), Expect = 8.860e-22
Identity = 15/55 (27.27%), Postives = 22/55 (40.00%), Query Frame = 2
Query:   65 RAEFGTRAAVTSFAYAIVPGYFFPSLGALFFVXWLXK--DSXTAXLIGSXRNGFG 223
            R  F     + SF +  VPG+ F  L     + W  K   +  A  I   ++G G
Sbjct:  274 RYRFFLIVLIGSFIWYWVPGFLFTGLSYFNVILWGSKTRHNFIANTIFGTQSGLG 328          
BLAST of DC900321 vs. ExPASy Swiss-Prot
Match: OPT2_YEAST (Oligopeptide transporter 2 OS=Saccharomyces cerevisiae GN=OPT2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.783e-13
Identity = 56/193 (29.02%), Postives = 90/193 (46.63%), Query Frame = 3
Query:  339 IITPIAYFTNSNNARHFPFSSTRLFDKYGHLYNVSKVVKDTDLTFNSKAYQGYSNLYLSVVYLFALGFEFAAVTASLSHFIAFYGRDAWQQFK------------QAYVSSNNST-------EDVHNRLMKKYKPVPQCWYLAILITAVGLAILSCEAFGDQLQLPYWGILFSCL-LILIFVLPLGVLQATTG 857
            +I    Y++N  + ++ P  +  L+   GH + V++V+ D+D   + K YQ YS  Y S   L + G    A    ++     + +  +  FK            +++V+   S        +D H+  MK YK VP  WY AILI ++ + I   E +      P WG LF CL    +F++P  +LQATTG
Sbjct:  420 LIVIAVYYSNYMSCQYLPIFTNSLYTNTGHSFKVTEVL-DSDNKLDVKKYQSYSPPYYSAGNLVSYGAFICAYPLMITWSFIVHSKLLFNAFKDWALNLWAMRKLKSWVTMFKSDYRALDDYDDPHSNAMKNYKEVPDWWYFAILIGSLVVGIAVVEHY--PTNTPVWG-LFVCLGFNFVFLIPTTILQATTG 608          
BLAST of DC900321 vs. ExPASy Swiss-Prot
Match: YQJC_SCHPO (Uncharacterized oligopeptide transporter C1840.12 OS=Schizosaccharomyces pombe GN=SPCC1840.12 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.356e-12
Identity = 45/178 (25.28%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  336 YIITPIAYFTNSNNARHFPFSSTRLFDKYGHLYNVSKVVKDTDLTFNSKAYQGYSNLYLSVVYLFALGFEFAAVTASLSHFIAFYGRDAWQQFKQAYVSSNNSTEDVHNRLMKKYKPVPQCWYLAILITAVGLAILSCEAFGDQLQLPYWGILFSCLLILIFVLPLGVLQATTGQVIN 869
            +I+ P  Y+ N     HFP  +  ++   G  Y+  KVV D+     ++ YQ YS + L + ++  +     A ++ +  F   +  D  Q     +  S     D+H +L+KKYK V   +YLA +I ++GL     E + D +Q+  +G + S ++     +PL ++++ +   I+
Sbjct:  360 WIVLPGLYYQNYWQVAHFPIMTNSIYTVSGKSYDAQKVV-DSKWELVTQKYQEYSPVMLPIAFIINIALSLGAFSSMMISFFLRFPTDVIQPICHVFKYS-----DIHTKLLKKYKRVHWGFYLASIIVSLGLGFAFTEGWHD-IQIRSYGFVVSMVIGAALYIPLSLIESRSSFTIS 530          
The following BLAST results are available for this feature:
BLAST of DC900321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
OPT_SCHPO9.964e-2832.57Uncharacterized oligopeptide transporter C29B12.10... [more]
OPT1_YEAST8.860e-2232.57Oligopeptide transporter 1 OS=Saccharomyces cerevi... [more]
OPT2_YEAST2.783e-1329.02Oligopeptide transporter 2 OS=Saccharomyces cerevi... [more]
YQJC_SCHPO2.356e-1225.28Uncharacterized oligopeptide transporter C1840.12 ... [more]

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Properties
Property NameValue
Genbank descriptionDC900321 VSS Citrus sinensis cDNA clone VS28670 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900321 ID=DC900321; Name=DC900321; organism=Citrus sinensis; type=EST; length=909bp
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGACTCGTGCCGAATTCGGCACGAGGGCAGCCGTCACAAGT
TTTGCTTATGCAATCGTACCAGGCTATTTCTTTCCTTCTTTGGGTGCTCT
TTTTTTTGTTTGNTGGTTGTGNAAAGATTCANTGACAGCTCANCTTATTG
GTTCTNNTCGAAATGGCTTTGGCATTGCNTCATTTGCCTTGNACTGNAAT
GCCATANCGGCTTACTCGGNGAATCCATTAGTTTACCCCTTGTCTACAAT
CATTAATATGACAACTGGATTCATCTTCTTCCCTCTACATCATCACGCCA
ATCGCTTATTTCACTAATTCTAACAATGCCAGGCATTTTCCATTTTCCTC
TACCCGACTTTTTGACAAATATGGTCATCTTTATAACGTCTCCAAAGTTG
TCAAGGACACCGATCTTACGTTCAACTCAAAAGCATATCAAGGTTACTCA
AATTTGTACTTAAGTGTTGTGTACCTATTTGCACTTGGATTCGAATTTGC
CGCTGTCACAGCCTCGCTCAGTCATTTTATAGCTTTTTATGGACGAGATG
CATGGCAACAATTTAAGCAAGCATATGTTAGCAGCAACAACAGCACTGAA
GATGTCCACAATAGGCTAATGAAGAAGTACAAACCAGTTCCTCAGTGTTG
GTACTTAGCAATATTGATCACAGCAGTCGGTTTGGCAATTTTATCTTGTG
AAGCGTTTGGGGATCAGTTGCAACTTCCTTACTGGGGCATCTTGTTTTCA
TGTCTTTTGATCTTGATTTTTGTTCTCCCACTTGGAGTACTGCAAGCTAC
AACCGGCCAAGTAATTAATTACTTAATAAGCCATCTATCTAAGTAATTGA
TATTCAACT
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