CX043677

Overview
NameCX043677
Unique NameCX043677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043677 vs. ExPASy Swiss-Prot
Match: LACG2_STRR6 (6-phospho-beta-galactosidase 2 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=lacG2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 2 
Query:    2 NNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRK-YKDKQGGNIGLV 376
            +N+     ++ ++P+VTL+H+D P  LH S G +LN+E +++F  YA  CF  F + V  W T NE        Y  G F PG  Q+   + +   H+ +++HA A  +Y+ K YK    G IG+V
Sbjct:   97 HNLFAECHKRHVEPFVTLHHFDTPEALH-SNGDFLNRENIEHFVDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPG-IQYDLAKVFQSHHNMMVSHARAVKLYKDKGYK----GEIGVV 215
[Close]
BLAST of CX043677 vs. ExPASy Swiss-Prot
Match: LACG_STRGC (6-phospho-beta-galactosidase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=lacG PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 2 
Query:    2 NNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRK-YKDKQGGNIGLV 376
            +N+     ++ ++P+VTL+H+D P  LH S G +LN++ +++F  YA  CF  F + V+ W T NE        Y  G F PG  Q+   + +   H+ +++HA A  +Y+ K YK    G IG+V
Sbjct:   97 HNLFAECHKRHVEPFVTLHHFDTPEALH-SNGDFLNRDNIEHFVDYAAFCFEEFPE-VRYWTTFNEIGPIGDGQYLVGKFPPG-IQYDLAKVFQSHHNMMVSHARAVKLYKDKGYK----GEIGVV 215
The following BLAST results are available for this feature:
BLAST of CX043677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
LACG2_STRR66.036e-1134.926-phospho-beta-galactosidase 2 OS=Streptococcus pn... [more]
LACG_STRGC7.883e-1134.136-phospho-beta-galactosidase OS=Streptococcus gord... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12G03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G03-M6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043677 ID=CX043677; Name=CX043677; organism=Citrus sinensis; type=EST; length=677bp
CAACAATATCATTGATGCTCTTCTTCAAAAGGGTATTCAGCCTTATGTAA
CATTGTACCATTGGGATCTTCCTTTGCATCTTCATGAGTCAATGGGTGGG
TGGTTAAATAAGGAAATAGTAAAATATTTTGAAATTTATGCAGATACTTG
CTTTGCAAGTTTTGGCGATAGAGTAAAGAATTGGATTACAATAAATGAGC
CCCTACAAACTGCGGTTAATGGGTATTGTACTGGGATATTTGCTCCTGGA
AGACATCAGCATTCATCAACAGAGCCATATTTGGTTGCTCACCACCAGAT
CTTGGCCCATGCTGCAGCATTTTCAGTATACCAAAGAAAGTATAAGGATA
AGCAAGGGGGAAACATAGGGTTGGTGGTAGATTGTGAATGGGCTGAGGCT
AATTCAGATAAAATTGAAGATAAATCTGCAGCAGCGAGGCGCCTTGATTT
CCAGATTGGATGGTACTGCTTGAAATACTCAGTAAATGTTATTTCCTTGA
ATTAGTTAATTAATGGTGTTGTTTGGATAATTTGGTGCAAAAATAAAACT
TATAGTTCGCCAAGTCTGATTCTTTAAATTGCAAATCATTCCATCTCTTC
TTTTTTACAATGCAAATATTTATATTTGAGCTGGTGGCACATCTCCGTTT
TGTTTTCCTTTAAAAAAAAAAAAAAAA
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