DC900320

Overview
NameDC900320
Unique NameDC900320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.981e-35
Identity = 76/197 (38.58%), Postives = 120/197 (60.91%), Query Frame = -3
Query:  152 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILR------DNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 715
            FHMD I   +N+RA NY I   D+ K+K IAG+IIPAIAT+TA   GLVCLELYKV+ G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL+Q L + + +  L    +S G  +L++   P  + KER+D+ + ++V  V+K +L  + +   + + C DE   D+++P +
Sbjct:  857 FHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYV 1053          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.104e-33
Identity = 75/194 (38.66%), Postives = 121/194 (62.37%), Query Frame = -3
Query:  143 HMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSW-TVWDRWILRDNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIY 712
            H++ I   +N RA+NY I   D+ K KFIAGRIIPAIAT+T++ TGLV LELYK++D    +E Y+N F NLALP F  +EP+     ++ +  +  +WDR+ ++ +  L  L++  + D+GL    +SYG  LL+ S FP  + KER++  +  LV+ V K ++P +     + +   D++  D+++P I+I+
Sbjct:  830 HIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVSTMILEICADDKEGEDVEVPFITIH 1023          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA1_DICDI (Ubiquitin-like modifier-activating enzyme 1 OS=Dictyostelium discoideum GN=uba1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.429e-28
Identity = 72/193 (37.31%), Postives = 112/193 (58.03%), Query Frame = -3
Query:  152 HMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPV-PPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHK---ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVD-EDDNDIDIPQI 712
            H+D I   +N+RA NY I   DK K K IAG+IIPA+ T+TA+  G VC+EL KV+     LE Y++TF NL +P F   EP+  PK    +  +WT+WDR+ +  + TL++ L   + K GL+   +S    LL+ ++F   K   ER+  K+  L   ++K  LP  +++  + + C D E  +D+D+P +
Sbjct:  822 HIDFITATSNLRATNYAISPADKHKTKGIAGKIIPALVTTTAVVAGFVCIELIKVIQ-NKALEKYKSTFMNLGIPFFGFVEPIAAPKNKIREGWTWTLWDRFDVDGDITLKEFLDLFEKKHGLDISMLSCKVTLLY-ALFTDKKTKEERLKMKISQLYETLSKKPLPKDKKYLLLEICCNDTETGDDVDVPSV 1012          

HSP 2 Score: 21.557 bits (44), Expect = 3.429e-28
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = -2
Query:  717 QFEKDDDXN 743
            QFEKDDD N
Sbjct:  812 QFEKDDDTN 820          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.086e-24
Identity = 68/198 (34.34%), Postives = 111/198 (56.06%), Query Frame = -3
Query:  137 HMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFK-HQDMSWTVWDRWIL--RDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDI--PQISIYFS 712
            H+D I   +N+RA+ Y I   D+ K K IAG+IIPAIAT+TA  +GLV LE+ KV  GG+  E Y+N F NLA+P+    E    +  K    +S+T+WDRW +  +++ TL   +  +++K G+    +  G  +L+  + P H +R+   +  LV+   +      +++ D+ V+   + D D D+  P +  YFS
Sbjct:  858 HIDFITAASNLRAKMYSIEPADRFKTKRIAGKIIPAIATTTATVSGLVALEMIKV-TGGYPFEAYKNCFLNLAIPIVVFTETTEVRKTKIRNGISFTIWDRWTVHGKEDFTLLDFINAVKEKYGIEPTMVVQGVKMLYVPVMPGHAKRLKLTMHKLVKPTTE------KKYVDLTVSFAPDIDGDEDLPGPPVRYYFS 1048          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.012e-23
Identity = 67/198 (33.84%), Postives = 109/198 (55.05%), Query Frame = -3
Query:  137 HMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVP-PKVFKHQDMSWTVWDRWIL--RDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDI--PQISIYFS 712
            H+D I   +N+RA+ Y I   D+ K K IAG+IIPAIATSTA  +GLV LE+ KV  GG+  + Y+N F NLA+P+    E     K      +S+T+WDRW +  +++ TL   +  +++  G+    +  G  +L+  + P H +R+   +  LV+   +      +++ D+ V+   + D D D+  P +  YFS
Sbjct:  858 HIDFITAASNLRAKMYSIEPADRFKTKRIAGKIIPAIATSTAAVSGLVALEMIKVA-GGYPFDAYKNCFLNLAIPIIVFTETSEVRKTEIRNGISFTIWDRWTVHGKEDFTLSDFINAVKENYGIEPTMVVQGVKMLYVPVMPGHAKRLKLTMHKLVKPSTE------KKYVDLTVSFAPDADGDEDLPGPPVRYYFS 1048          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22
Identity = 69/209 (33.01%), Postives = 110/209 (52.63%), Query Frame = -3
Query:  152 PSLKRMMXQ-----TFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWIL---RDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPRHK--ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 745
            P LK +M +      FH+D +   A++R +NYGIP V++ ++K I G+IIPAIAT+TA   GL+ LELYKV+ G      +R+++ +LA        P  P +     + WT WDR  +   +   TL  LL  LQ++ GL    + +GS LL+ + +   K  + +  +V +LV+ +   + P   Q   V+    + DD D   P +
Sbjct:  801 PPLKPLMFEKDDDSNFHVDFVVAAASLRCQNYGIPPVNRAQSKRIVGQIIPAIATTTAAVAGLLGLELYKVVSGPRPRSAFRHSYLHLAENYLIRYMPFAPAIQTFHHLKWTSWDRLKVPAGQPERTLESLLAHLQEQHGLRVRILLHGSALLYAAGWSPEKQAQHLPLRVTELVQQLT-GQAPAPGQRVLVLELSCEGDDEDTAFPPL 1008          
The following BLAST results are available for this feature:
BLAST of DC900320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBA1_MOUSE9.981e-3538.58Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_YEAST1.104e-3338.66Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]
UBA1_DICDI3.429e-2837.31Ubiquitin-like modifier-activating enzyme 1 OS=Dic... [more]
UBA6_HUMAN2.086e-2434.34Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]
UBA6_MOUSE3.012e-2333.84Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA7_HUMAN1.952e-2233.01Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionDC900320 VSS Citrus sinensis cDNA clone VS28669 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900320 ID=DC900320; Name=DC900320; organism=Citrus sinensis; type=EST; length=780bp
GAATAAGCTACTGATTGATAGGAGAATATTTAGTCACCATAACAAATCCA
GTACATCTGCTCATGTTCACAAAGCATATCATTCATTTTTCATCCTACCA
ATAAATGTCAACTAATTAACTAGACGGAAACACCTAACTAAAGTAAATTG
AGATTTGAGGAATATCAATATCATTGTCATCTTCATCCACGCATGCGACT
ACCACATCAAAATGTTGTCGATATGGAGGCAGTTCTGCCTTGGCCACATC
CCTAACCAGATCCACCACCTTCTTGTCCATCCTTTCTTTGTGCCTCGGAA
ACATGCTGTTAAAAAGCAAGCAACTCCCATAGGAGATGCTGTAAGCATTC
AAGCCCTTGTCCTGCAACCACTGAAGAAGTTGTCTTAGTGTAGGGTTGTC
CCGCAAAATCCACCGGTCCCACACAGTCCAGCTCATATCCTGATGCTTGA
ACACCTTAGGTGGAACTGGCTCAGCCATCGAGAACAGAGGGAGGGCCAGA
TTGGCAAAGGTATTTCGGTAGTCTTCCAGTTTGTGCCCACCATCTAGAAC
CTTATAAAGCTCCAAGCACACAAGACCAGTTGCCATGGCAGTAGAGGTTG
CGATTGCTGGGATAATCCTCCCTGCAATGAACTTGGCCTTGAGCTTGTCA
ACTTCAGGGATGCCATAGTTCCTTGCCCTCATGTTTGCAAGGCCAGCTAT
TAAGTCCATGTGGAAGGTTTGNATCATCATCCTTTTCAAACTGGGATTGG
GTTCATCTTGGAACCTGGTTGGCAGCTGCT
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