CX043672

Overview
NameCX043672
Unique NameCX043672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043672 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.808e-25
Identity = 48/170 (28.24%), Postives = 79/170 (46.47%), Query Frame = 1
Query:  304 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTF 807
            K ++  FFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC       +  R+G++  +
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQY 266          

HSP 2 Score: 53.9138 bits (128), Expect = 1.808e-25
Identity = 30/81 (37.04%), Postives = 41/81 (50.62%), Query Frame = 3
Query:   90 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 326
            G G   G    G G+ G  +  +++   F  +   +N A   C  + FYT  AF+ A  A+PGF + G E   KREIAAFF
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI---KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFF 138          
BLAST of CX043672 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.065e-25
Identity = 46/141 (32.62%), Postives = 78/141 (55.32%), Query Frame = 1
Query:  394 YCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTF 807
            +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDY 254          

HSP 2 Score: 50.447 bits (119), Expect = 3.065e-25
Identity = 30/84 (35.71%), Postives = 42/84 (50.00%), Query Frame = 3
Query:   87 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 326
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  F
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMF 126          
BLAST of CX043672 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.984e-25
Identity = 55/171 (32.16%), Postives = 80/171 (46.78%), Query Frame = 1
Query:  304 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTF 807
            K ++  FFA   HET                CYI +++ A+ D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +
Sbjct:  135 KREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDY 271          

HSP 2 Score: 43.1282 bits (100), Expect = 3.984e-25
Identity = 25/85 (29.41%), Postives = 36/85 (42.35%), Query Frame = 3
Query:   72 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 326
            G     G     G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++ GF N       KREIAAFF
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFF 142          
BLAST of CX043672 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 8.477e-24
Identity = 68/185 (36.76%), Postives = 99/185 (53.51%), Query Frame = 1
Query:  265 FQALVTLEMKPCVKEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGND--AVR-NRIGFFTTF 807
            F A  T+      K ++  F A     T+G  +D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+        G+D  AVR + IGF+  +
Sbjct:  167 FPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRY 339          
BLAST of CX043672 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.947e-23
Identity = 46/142 (32.39%), Postives = 68/142 (47.89%), Query Frame = 1
Query:  394 YCYIRQVSPASSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTF 807
            +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEY 256          

HSP 2 Score: 46.2098 bits (108), Expect = 5.947e-23
Identity = 27/80 (33.75%), Postives = 38/80 (47.50%), Query Frame = 3
Query:   87 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 326
            CG+G   G   T        +   I    F + +  + D+ C  + FYT DAF+ A  ++  FG  G+E   KREIAA F
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAF 126          
BLAST of CX043672 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.166e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  616 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 753
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CX043672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_MAIZE1.808e-2528.24Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA3.065e-2532.62Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI4_ORYSJ3.984e-2532.16Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI8.477e-2436.76Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_PHAVU5.947e-2332.39Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY2.166e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_12F12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F12-K24-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043672 ID=CX043672; Name=CX043672; organism=Citrus sinensis; type=EST; length=807bp
CTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCTA
GTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGT
TGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTGG
GCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAAT
GATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTATAGA
GGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCATGC
GTAAAAGAGAAATTGCTGCCTTTTTTTGCCCAAACTGGCCATGAAACTAC
TGGGGGATGGACCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCT
ATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTGTTATCCTTACTGT
CCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAACTCAC
TTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGT
TGAACAATCCAGACCTACTTGCCACTGATCCAGTACTATCATTCAAGTCA
GCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGA
AGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCC
GGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAA
TGTGGCTACGTTGGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTAC
CACTTTC
back to top