CX043671

Overview
NameCX043671
Unique NameCX043671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:290..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043671 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.971e-26
Identity = 72/197 (36.55%), Postives = 105/197 (53.30%), Query Frame = -1
Query:  238 FQALVTLEMKPCVKEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGND--AVR-NRIGFFTTFCGKFGIQPGDNL 816
            F A  T+      K ++  F A     T+G  +D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+        G+D  AVR + IGF+  +C   G+  G +L
Sbjct:  167 FPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of CX043671 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.196e-26
Identity = 57/184 (30.98%), Postives = 88/184 (47.83%), Query Frame = -1
Query:  232 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 777
            K ++  FFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++  +C + G+ PG NL C
Sbjct:  120 KREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          

HSP 2 Score: 37.7354 bits (86), Expect = 2.196e-26
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = -3
Query:  755 AFIEAAQAFPGFGNSGNETMRKREIAAFF 841
            AF+ A + +PGF + G++   KREIAAFF
Sbjct:   99 AFLSAVKGYPGFAHGGSQVQGKREIAAFF 127          
BLAST of CX043671 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.809e-25
Identity = 54/155 (34.84%), Postives = 88/155 (56.77%), Query Frame = -1
Query:  232 YCYIRQVSPASSDXXXXXXXXP--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 687
            +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          

HSP 2 Score: 29.6462 bits (65), Expect = 1.809e-25
Identity = 15/30 (50.00%), Postives = 18/30 (60.00%), Query Frame = -3
Query:  755 DAFIEAAQAFPGFGNSGNETMRKREIAAFF 844
            D+FI AA  FP F NS    + +REIA  F
Sbjct:  101 DSFINAANTFPNFANS----VTRREIATMF 126          
BLAST of CX043671 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.062e-25
Identity = 54/184 (29.35%), Postives = 87/184 (47.28%), Query Frame = -1
Query:  232 KEKLLPFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 777
            K ++  FFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC       +  R+G++  +C +  + PG NL C
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          

HSP 2 Score: 38.891 bits (89), Expect = 3.062e-25
Identity = 17/29 (58.62%), Postives = 20/29 (68.97%), Query Frame = -3
Query:  755 AFIEAAQAFPGFGNSGNETMRKREIAAFF 841
            AF+ A  A+PGF + G E   KREIAAFF
Sbjct:  110 AFLSAVNAYPGFAHGGTEVEGKREIAAFF 138          
BLAST of CX043671 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.234e-24
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = -1
Query:  232 YCYIRQVSPASSDXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 687
            +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          

HSP 2 Score: 31.9574 bits (71), Expect = 7.234e-24
Identity = 15/30 (50.00%), Postives = 19/30 (63.33%), Query Frame = -3
Query:  755 DAFIEAAQAFPGFGNSGNETMRKREIAAFF 844
            DAF+ A  ++  FG  G+E   KREIAA F
Sbjct:   97 DAFLSALNSYTDFGRVGSEDDSKREIAAAF 126          
BLAST of CX043671 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -1
Query:  328 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 465
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CX043671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
AGI_URTDI1.971e-2636.55Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIB_MAIZE2.196e-2630.98Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA1.809e-2534.84Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIA_MAIZE3.062e-2529.35Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU7.234e-2433.97Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY2.339e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12F12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F12-K24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043671 ID=CX043671; Name=CX043671; organism=Citrus sinensis; type=EST; length=849bp
TTTTTTTTTTTTTTTTTGATGGAGAAGACTCATTGATCCATGTTGGATCA
GTCTTATTTAATTTACTTACAATAAGAGCGTAACAAACTAACAATTTAGT
TGTCCACCTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATT
AAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCA
TCAGATTAAGGCCATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCA
GGCTGAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTT
ACGTACAGCGTCATTCCCAACGTAGCCACATTCAATTCCACCGTTGATTA
TATTTGTGGTTAGACCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTT
GCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTTTGG
TGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTACTG
GATCAGTGGCAAGTAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCT
TCTCCGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCG
GCCATAGTATTGCCCTGGCAAGGGACATGGACAGTAAGGATAACAGTAGT
CGGACGACGCAGGGCTAACTTGCCTAATATAGCAATATCCCCAAGCATAT
TCTCCACCAGGTGCATCGGTCCATCCCCCAGTAGTTTCATGGCCAGTTTG
GGCAAAAAAAGGCAGCAATTTCTCTTTTACGCATGGTTTCATTTCCAGAG
TTACCAAAGCCTGGAAAAGCTTGGGCTGCCTCTATAAAAGCATCATAAG
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