DC900319

Overview
NameDC900319
Unique NameDC900319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.801e-34
Identity = 72/201 (35.82%), Postives = 115/201 (57.21%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDD 603
            K  P+CT+ +FP+ I+H + WAR  FEGL ++    VN YL+SP    +++K + +   R+ L+ + + L  E+  +F++CI WARL+F+ +F + ++QL F FP+++ TS G PFWS PKR P PL F + +  H  F++AA+ L A  YG+        P      +     P F PK  +KI+ +E   +  T +  D
Sbjct:  588 KSFPICTLKNFPNRIEHTIAWARDLFEGLFKQPIDNVNMYLSSPNFLETSLKTSSNP--REVLENIRDYLVTEKPLSFEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHFDFIVAAASLYAFNYGLKSE---TDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETAANKD 783          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 73/203 (35.96%), Postives = 117/203 (57.64%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIE-TDEKATSMSTGSIDDA 606
            K  P+CT+ +FP+ I+H + WAR EFEGL +++   VN YLT P      ++ AG  Q  + L+ +   L  +R +T+ DC+TWA   +   ++  ++QL   FP    TS+G  FWS PKR P PL F +++  HL ++MAA+ L A+TYG+      +    +A  +  + VP F PK  ++I  ++++  S S  +IDD+
Sbjct:  626 KSIPICTLKNFPNAIEHTVQWARDEFEGLFKQSAENVNQYLTDPKFMERTLQLAG-TQPLEVLEAIHCSLVLQRPQTWADCVTWAYQHWHTQYSHNIQQLLHNFPPAQLTSSGALFWSGPKRCPHPLTFDINNPLHLDYVMAAANLFAQTYGL---GGSQDCAVVAKLLQSLPVPKFAPKSGIRIHVSEQELQSTSATTIDDS 824          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25
Identity = 61/191 (31.94%), Postives = 102/191 (53.40%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKA 573
            ++ P CT+ SFP  I+H + WAR +FE      P+  N +  +       ++   + Q+ +   +V++ L + R   +  C+  ARL+FE YF  +  QL   FP      +G+ FW +PKR P P++F +++  HL FL +A+ L A  Y IP  +   S   L D +++V + +F+P   V ++TDE A
Sbjct:  620 EEIPFCTLKSFPAAIEHTIQWARDKFESSFSHKPSLFNKFWQAYPSAEDVLQKIQNGQSLEGCFQVIKLLSR-RPRIWSQCVELARLKFEKYFNHKALQLLHCFPLETRLKDGSLFWQSPKRPPSPIKFDLNEPLHLSFLQSAAKLYATVYCIPFSEKDLSVNSLMDILSEVKIEEFKPSNKV-VQTDETA 808          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.984e-24
Identity = 59/191 (30.89%), Postives = 101/191 (52.88%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKA 573
            ++ P CT+ SFP  I+H + WAR +FE      P+  N +  + +     ++      + +   +V++ L + R   +  C+  ARL+FE YF  +  QL   FP +    +G+ FW +PKR P P++F +++  HL FL  A+ L A  Y IP  +   S   L + +++V + +F+P   V ++TDE A
Sbjct:  620 EEIPFCTLKSFPAAIEHTIQWARDKFESSFSHKPSLFNKFWQTYSSAEEVLQKIQSGHSLEGCFQVIKLLSR-RPRNWSQCVELARLKFEKYFNHKALQLLHCFPLDIRLKDGSLFWQSPKRPPSPIKFDLNEPLHLSFLQNAAKLYATVYCIPFAEEDLSADALLNILSEVKIQEFKPSNKV-VQTDETA 808          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.155e-22
Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 1
Query:   10 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIP-IPDW 474
            P+CTV  FP   +H L WAR EFE L   +   +N +  + T  A    +  + Q    L  VL  L + R + +QDC+ WA   ++  F   +KQL   FP N    +GTPFWS PK+ P+PL+F  +  +HL +++AA+ L A+ +G+P   DW
Sbjct:  597 PVCTVRYFPSTAEHTLQWARHEFEELFRLSAETINHHQQAHTSLA----DMDEPQTLTLLKPVLGVL-RVRPQNWQDCVAWALGHWKLCFHYGIKQLLRHFPPNKVLEDGTPFWSGPKQCPQPLEFDTNQDTHLLYVLAAANLYAQMHGLPGSQDW 747          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBE1Y_MACRU (Ubiquitin-activating enzyme E1 Y (Fragment) OS=Macropus rufus GN=UBE1Y PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFP 315
            K  P+CT+ +FP+ I+H L WAR EFE L ++    VN YLT+P ++       G  Q  + L+ V   L  +R   + DC+TWA L +   +A+ ++QL   FP
Sbjct:   46 KSIPICTLKNFPNAIEHTLQWARDEFESLFKQPAENVNQYLTNP-KFVERTLRLGGTQPLEVLEAVHRSLVLQRPHDWADCVTWACLHWHSQYANNIRQLLHNFP 149          
The following BLAST results are available for this feature:
BLAST of DC900319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBA1_SCHPO2.801e-3435.82Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]
UBA1Y_MOUSE7.627e-3235.96Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA6_MOUSE5.294e-2531.94Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA6_HUMAN9.984e-2430.89Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]
UBA7_HUMAN7.155e-2237.18Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]
UBE1Y_MACRU4.967e-1537.14Ubiquitin-activating enzyme E1 Y (Fragment) OS=Mac... [more]

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Properties
Property NameValue
Genbank descriptionDC900319 VSS Citrus sinensis cDNA clone VS28669 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900319 ID=DC900319; Name=DC900319; organism=Citrus sinensis; type=EST; length=652bp
AAACAAGCTCCCATGTGCACAGTTCATTCATTCCCACACAACATTGATCA
CTGCCTGACTTGGGCTCGGTCTGAGTTTGAGGGTTTGCTTGAGAAGACAC
CAGCAGAAGTAAATGCCTATCTGACTAGTCCCACTGAGTACGCATCTGCA
ATGAAGAATGCTGGTGATGCTCAGGCCAGGGACAACTTGGACCGCGTCCT
TGAATGCCTTGATAAGGAGAGATGTGAAACATTCCAAGACTGTATCACCT
GGGCCCGTCTAAGGTTTGAAGACTACTTTGCTGACCGTGTGAAGCAATTG
ACATTTACTTTTCCTGAGAATGCTACAACCAGCAACGGGACACCCTTCTG
GTCAGCCCCCAAGCGTTTCCCCCGCCCTTTGCAGTTCTCAGTTGATGATC
TCAGTCACCTTCAATTTTTGATGGCAGCATCAATATTACGAGCTGAAACA
TATGGCATTCCTATCCCTGATTGGGTCAAGTCACCCGTAAAGCTAGCTGA
TGCTGTTAACAAAGTGATAGTCCCTGATTTCCAGCCCAAGGAAAATGTAA
AGATTGAGACAGATGAGAAAGCCACAAGTATGTCCACTGGATCAATTGAT
GATGCTGTAGTAATCAATGAGTTGCTCCAAAGNTAGAAATGCAGAGCGTG
CA
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