DC900317

Overview
NameDC900317
Unique NameDC900317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig661 contig Csv1_Contig661:266..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.794e-37
Identity = 82/156 (52.56%), Postives = 99/156 (63.46%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+WK                  ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   37 LHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.794e-37
Identity = 82/156 (52.56%), Postives = 99/156 (63.46%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+WK                  ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   37 LHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.343e-37
Identity = 82/156 (52.56%), Postives = 99/156 (63.46%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+WK                  ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   37 LHMLKNDRVAVLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.060e-37
Identity = 82/156 (52.56%), Postives = 99/156 (63.46%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+WK                  ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   37 LHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.996e-37
Identity = 80/156 (51.28%), Postives = 100/156 (64.10%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+WK                  +RF E+K              VPF++LGNKID P A SEEELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   37 LHMLKNDRVAILQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.996e-37
Identity = 82/156 (52.56%), Postives = 99/156 (63.46%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+WK                  ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   37 LHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.518e-36
Identity = 77/156 (49.36%), Postives = 99/156 (63.46%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W+                  ERF E+K              VPF++LGNKID P A SE+ELR+ LGL   TTGKG+V L    +RP+E+FMCS+V + GYGDG +WLS Y+
Sbjct:   37 LHMLKNDRVAILQPTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGRVQL--EGIRPIELFMCSVVMRQGYGDGIRWLSNYV 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.518e-36
Identity = 80/156 (51.28%), Postives = 95/156 (60.90%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            L MLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVWK                   R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS++++ GYG+GF+WLSQYI
Sbjct:   42 LQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 82/156 (52.56%), Postives = 97/156 (62.18%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+    PT +PTSEEL IG  +F  FDLGGHQ ARR+WK                  ERF ESK              VPFLVLGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   37 LHMLKNDRVAILSPTAHPTSEELVIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.983e-36
Identity = 80/155 (51.61%), Postives = 98/155 (63.23%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQY 466
            LHMLK++R+   QPT +PTSEELSIG ++F  FDLGGHQ ARR+WK                  ERF E+K              VPF+VLGNKID P A SE+ELR+ LG+   TTGKGKV L    +RP+EVFMCS+V + GYGDG +WLS +
Sbjct:   37 LHMLKNDRVAILQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGDGIRWLSHF 188          
The following BLAST results are available for this feature:
BLAST of DC900317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
SAR1_ASPFU1.794e-3752.56Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_ASPCL1.794e-3752.56Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
SAR1_ASPOR2.343e-3752.56Small COPII coat GTPase sar1 OS=Aspergillus oryzae... [more]
SAR1_ASPNC3.060e-3752.56Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_MAGGR3.996e-3751.28Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
SAR1_ASPTN3.996e-3752.56Small COPII coat GTPase sar1 OS=Aspergillus terreu... [more]
SAR1_TRIRE1.518e-3649.36Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]
SAR1A_MOUSE1.518e-3651.28GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1_EMENI1.983e-3652.56Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1_CHAGB1.983e-3651.61Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]

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Properties
Property NameValue
Genbank descriptionDC900317 VSS Citrus sinensis cDNA clone VS28666 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900317 ID=DC900317; Name=DC900317; organism=Citrus sinensis; type=EST; length=817bp
GCTTCACATGTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGT
ATCCCACATCGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTT
GATTTGGGAGGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGC
GATNGTTGATGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGT
TTGCAGAATCAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTG
GCCAATGTTCCCTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGC
TGCTTCTGAGGAAGAGTTGCGTTACCACCTTGGCCTATCAAATTTCACCA
CTGGGAAGGGGAAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAG
GTGTTTATGTGTAGCATAGTTCGCAAAATGGGATATGGTGATGGTTTCAA
ATGGCTCTCTCAATACATTAAGTAGGGTAATGCTCAGGAAGTGTTATAGA
AGTAATGCAGATTTCAAAATTTCACCCATGCCTACTACACCCTGTTTCAC
CAAAAAAAAATTGTGTTTATCTACTTGTTTGATCTTTTAGTCTGTTAGTG
GGACTTGAACCAGAGGTACTGTGTTTTGAGTCTGTTTGGAAGGTGGTAGT
TATGTTACTGCTCTGTAAAATTTACTTGTGGATAGCAGGTCATTATCTGG
TATTGTAGTTTTGTCAAATTACTTGCACCTATTGTCATGTTCTGCTGTGG
AGCAGATATTAGAATTATTATTTGTTATTATTTTGTTAAGGGTTAATTTC
AAGTTCAAAACATCCCT
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