DC900317

Overview
NameDC900317
Unique NameDC900317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig661 contig Csv1_Contig661:266..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.418e-36
Identity = 81/156 (51.92%), Postives = 99/156 (63.46%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+WK                  ERFAESK             +VPFL+LGNKID+P A  E EL+  LGL N TTGK    L + + RP+EV+M S+V + GYG+GFKWLSQYI
Sbjct:   37 LHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYN-TTGKDTGKLPEGS-RPIEVYMVSVVMRSGYGEGFKWLSQYI 190          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.418e-36
Identity = 83/156 (53.21%), Postives = 97/156 (62.18%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+WK                  ERFAESK             +VPFL+LGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S+V +MGYGDGFKWLSQYI
Sbjct:   37 LHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYN-TTGKDTGKLPEGQ-RPIEVFMVSVVMRMGYGDGFKWLSQYI 190          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 9.843e-36
Identity = 79/156 (50.64%), Postives = 97/156 (62.18%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+   QPT +PTSEELSIG +KF  FDLGGH  ARR+W+                  ER  ESK             N PF++LGNKID P A SE++LR  LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   33 LHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 185          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.843e-36
Identity = 79/156 (50.64%), Postives = 97/156 (62.18%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+   QPT +PTSEELS+G +KF  FDLGGHQ ARR+WK                  ER  E+K              VPF+VLGNKID P A SE+ELR  LGL   TTGKG+V L    +RP+EVFMCS+V + GYG+  +WLSQY+
Sbjct:   37 LHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLWQ-TTGKGRVPL--EGIRPIEVFMCSVVMRQGYGEAIRWLSQYV 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 9.843e-36
Identity = 81/156 (51.92%), Postives = 96/156 (61.54%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+WK                  ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S+V + GYGD FKWLSQYI
Sbjct:   37 LHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPEGQ-RPIEVFMVSVVMRSGYGDAFKWLSQYI 190          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.285e-35
Identity = 79/156 (50.64%), Postives = 99/156 (63.46%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W+                  ER +ESK              VPFL+LGNKID P A SE+EL+  LGL   TTGKG V+     +RP+EVFMCS+V + GYG+GFKWL+QY+
Sbjct:   37 LHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLYQ-TTGKG-VSKPVPGIRPIEVFMCSVVLRQGYGEGFKWLAQYV 190          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.285e-35
Identity = 79/156 (50.64%), Postives = 98/156 (62.82%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+WK                  E F ESK              VPFL+LGNKID P A SE+++R+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:   37 LHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.740e-35
Identity = 80/156 (51.28%), Postives = 96/156 (61.54%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+WK                  ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S+V + GYG+ FKWLSQYI
Sbjct:   37 LHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPE-GTRPIEVFMVSVVMRSGYGEAFKWLSQYI 190          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.380e-35
Identity = 82/156 (52.56%), Postives = 94/156 (60.26%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEELSIG ++F  FDLGGH+ ARRVWK                  ERF ES+              VP LVLGNKID   A SE ELR+ LGL   TTGK KV L +   RPLEVF CSI  + GYG+G +WLSQYI
Sbjct:   37 LHMLKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGLMT-TTGKDKVQLVEGQ-RPLEVFTCSIYLRQGYGEGIRWLSQYI 190          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.332e-35
Identity = 78/156 (50.00%), Postives = 101/156 (64.74%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            L +LKD RL  + PT +PTSEEL++G I+FKAFDLGGH+ ARR+WK                 ++RF ESKK            NVPFL+LGNK+DI    SEE+ R  LGL+  TTGKGK  L  + VRP+EVFMCS+V++ GY +GF+WL+ Y+
Sbjct:   37 LGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIG-NTSEEKFRASLGLTQ-TTGKGKTTL--NGVRPIEVFMCSVVKRYGYAEGFRWLANYL 188          
The following BLAST results are available for this feature:
BLAST of DC900317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
SAR1_PICST4.418e-3651.92Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
SAR1_DEBHA4.418e-3653.21Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1_PHANO9.843e-3650.64Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_NEUCR9.843e-3650.64Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_LODEL9.843e-3651.92Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_SCHPO1.285e-3550.64Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]
SAR1_ASPNG1.285e-3550.64Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_CANAL3.740e-3551.28Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
SAR1_PICPG6.380e-3552.56Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1A_DICDI8.332e-3550.00GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionDC900317 VSS Citrus sinensis cDNA clone VS28666 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900317 ID=DC900317; Name=DC900317; organism=Citrus sinensis; type=EST; length=817bp
GCTTCACATGTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGT
ATCCCACATCGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTT
GATTTGGGAGGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGC
GATNGTTGATGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGT
TTGCAGAATCAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTG
GCCAATGTTCCCTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGC
TGCTTCTGAGGAAGAGTTGCGTTACCACCTTGGCCTATCAAATTTCACCA
CTGGGAAGGGGAAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAG
GTGTTTATGTGTAGCATAGTTCGCAAAATGGGATATGGTGATGGTTTCAA
ATGGCTCTCTCAATACATTAAGTAGGGTAATGCTCAGGAAGTGTTATAGA
AGTAATGCAGATTTCAAAATTTCACCCATGCCTACTACACCCTGTTTCAC
CAAAAAAAAATTGTGTTTATCTACTTGTTTGATCTTTTAGTCTGTTAGTG
GGACTTGAACCAGAGGTACTGTGTTTTGAGTCTGTTTGGAAGGTGGTAGT
TATGTTACTGCTCTGTAAAATTTACTTGTGGATAGCAGGTCATTATCTGG
TATTGTAGTTTTGTCAAATTACTTGCACCTATTGTCATGTTCTGCTGTGG
AGCAGATATTAGAATTATTATTTGTTATTATTTTGTTAAGGGTTAATTTC
AAGTTCAAAACATCCCT
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