DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_RHILO (60 kDa chaperonin 1 OS=Rhizobium loti GN=groL1 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 3.223e-64
Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 712
            +D+AVLT G +I+E+LG+ LE V ++MLG  K+V I KD T I+DGAG K +I+ R  QI+  IE +TSDYDKEKLQERLAKLSGGVAV+++GG +E+EV EKKDR+ DALNAT+AAVEEGIVPGGGV            + AN D   G+ I+  AL+ P+  I             KL +  + +LG+DA    YVDM+K+GI+DP KV+RTAL DA S+++L+ T EA++ ++P
Sbjct:  290 EDIAVLTAGQMISEDLGIKLENVTIEMLGRAKRVLIEKDTTTIIDGAGTKATIQARVAQIKGQIEETTSDYDKEKLQERLAKLSGGVAVIRVGGVTESEVKEKKDRIDDALNATRAAVEEGIVPGGGVALLRARSALSGLNGANADVTAGISIVLRALEAPIRQIAENSGVEGSIVVGKLADSKDHNLGFDAQNETYVDMIKAGIVDPAKVVRTALQDAGSIAALLITAEAMITDIP 526          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH603_RHIME (60 kDa chaperonin 3 OS=Rhizobium meliloti GN=groL3 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 4.210e-64
Identity = 123/238 (51.68%), Postives = 167/238 (70.17%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            +D+AVLT G +I+E+LG+ LE V LDMLG  ++V I KD T I+DG+GDK SI+ R  QI++ IE + SDYDKEKLQERLAKL+GGVAV+++GGA+E EV EKKDR+ DALNAT+AAVEEGIVPGGGV            +  N D   G+ I++ AL+ P+  I             KL++  + + G+DA    YVDM+K+GI+DP KV+RTAL DA S++SL+ T EA++ ++P+
Sbjct:  290 EDIAVLTAGQMISEDLGIKLENVTLDMLGRARRVLIEKDTTTIIDGSGDKASIQARVSQIKAQIEETASDYDKEKLQERLAKLAGGVAVIRVGGATELEVKEKKDRIDDALNATRAAVEEGIVPGGGVALLRAKSALVGLTDDNADVTAGISIVRRALEAPIRQIADNAGVEGSIVVGKLVDGRDHNQGFDAQTETYVDMIKAGIVDPAKVVRTALRDAGSIASLLITAEAMIADIPE 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_RHISN (60 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR234) GN=groL2 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 4.210e-64
Identity = 126/244 (51.64%), Postives = 171/244 (70.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG  I+E+LG+ LE V LDMLG  KKV + K++T I+DGAG K  IE R  QI++ IE +TSDYD+EKLQERLAKL+GGVAV+++GG++E EV E+KDRV DA++AT+AAVEEG++PGGGV             T N DQ+ G++I++ A++ PV  I             KL E+     G++A   E+ D+ + G+IDP+KV+RTAL DAASV+ L+ TTEA+V E PK  KEAP
Sbjct:  290 EDIAILTGGTAISEDLGIKLENVTLDMLGRAKKVVVEKENTTIVDGAGSKTEIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDAMHATRAAVEEGVLPGGGVALLRAVKALDRVQTENPDQRHGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKTEFGYGWNAQTNEFGDLFEQGVIDPVKVVRTALQDAASVAGLLITTEAMVAEKPK--KEAP 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_GLUDA (60 kDa chaperonin 1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 5.498e-64
Identity = 128/244 (52.46%), Postives = 173/244 (70.90%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+E+LG+ LE V L MLG  KKV I K++T I++GAG    I+ RC QIR+ IE +TSDYD+EKLQERLAKL+GGVAV+++GG++E EV E+KDRV DAL+AT+AAVEEGIVPGGG                N DQ++G +II+ AL+ P+  I             K+LE ++ + G+DA  G+Y D+V +GIIDP KV+RTAL DA+SV+ L+ TTEA+V E P+  K+AP
Sbjct:  290 EDIAILTGGQVISEDLGIKLETVTLAMLGRAKKVRIEKENTTIVEGAGASDDIKGRCGQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALARASTALGNLHFHNDDQRVGAEIIRKALQAPLRQIAHNAGEDGAVIAGKVLESNDYNYGFDAQIGDYKDLVAAGIIDPTKVVRTALQDASSVAGLLITTEAMVAEKPE--KKAP 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_RHISN (60 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR234) GN=groL1 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 7.181e-64
Identity = 126/244 (51.64%), Postives = 170/244 (69.67%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG  I+E+LG+ LE V L+MLG  KKV + K++T I+DGAG K  I+ R  QIR+ IE +TSDYD+EKLQERLAKL+GGVAV+++GG++E EV E+KDRV DA++AT+AAVEEG++PGGGV             T N DQK G++I++ AL+ PV  I             KL E+     G++A   E+ D+   G+IDP+KV+RTAL DAASV+ L+ TTEA+V E PK  K+AP
Sbjct:  290 EDIAILTGGTAISEDLGIKLENVTLNMLGRAKKVVVEKENTTIVDGAGSKSEIQGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDAMHATRAAVEEGVLPGGGVALLRAVKALDSIRTENADQKHGIEIVRRALEAPVRQIAENAGAEGSIIVGKLREKTEFGFGWNAQTNEFGDLYDQGVIDPVKVVRTALQDAASVAGLLITTEAMVAEKPK--KDAP 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 9.379e-64
Identity = 126/244 (51.64%), Postives = 177/244 (72.54%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LT G+LI+E+LG+ LE V L+MLG+ K+V+I+K++T I+DGAGD+ +I++R E IRS IE +TSDYD+EKLQER+AKL+GGVAV+K+GGA+E EV E+KDRV DAL+AT+AAV+EGIVPGGG             +  N DQ+ G+ I++ AL+ PV  I             KL++ ++  +G++A   +Y D+  +G+IDP KV+RTAL DAASV+ L+ TTEA V +LP E K AP
Sbjct:  290 EDIAILTKGELISEDLGIKLENVTLNMLGSAKRVSITKENTTIVDGAGDQSTIKDRVEAIRSQIEATTSDYDREKLQERVAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVQEGIVPGGGTALLYATKTLEGLNGVNEDQQRGIDIVRRALQAPVRQIAQNAGFDGAVVAGKLIDGNDDKIGFNAQTEKYEDLAATGVIDPTKVVRTALQDAASVAGLLITTEAAVGDLP-EDKPAP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: HSP60_YEAST (Heat shock protein 60, mitochondrial OS=Saccharomyces cerevisiae GN=HSP60 PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.225e-63
Identity = 125/240 (52.08%), Postives = 169/240 (70.42%), Query Frame = 2
Query:    5 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIE-NSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDL--GYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            D+AVLTGG + TEEL +  E+  ++ LG+C  +T++K+DTVIL+G+G K++I+ER EQI+ +I+  +T+ Y+KEKLQERLAKLSGGVAV+++GGASE EVGEKKDR  DALNAT+AAVEEGI+PGGG                NFDQK+GV II+ A+  P   I             KL+++   D   GYDA+K EY DM+ +GIIDP KV+R+ LVDA+ V+SL+ TTE  +V+ P+
Sbjct:  312 DIAVLTGGTVFTEELDLKPEQCTIENLGSCDSITVTKEDTVILNGSGPKEAIQERIEQIKGSIDITTTNSYEKEKLQERLAKLSGGVAVIRVGGASEVEVGEKKDRYDDALNATRAAVEEGILPGGGTALVKASRVLDEVVVDNFDQKLGVDIIRKAITRPAKQIIENAGEEGSVIIGKLIDEYGDDFAKGYDASKSEYTDMLATGIIDPFKVVRSGLVDASGVASLLATTEVAIVDAPE 551          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PELUB (60 kDa chaperonin OS=Pelagibacter ubique GN=groL PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.600e-63
Identity = 122/238 (51.26%), Postives = 161/238 (67.65%), Query Frame = 2
Query:    5 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            D+A+LTGG +I+E++G+ LE V L  LG+CK+V + KD++ I+ G G K  IE RC QI+  +  +TSDYD+EKLQERLAKL+GGVAV+K+GGA+E EV E+KDRV DALNAT+AA EEGIV GGG                  DQK GV ++  AL+ P+  I             KLLEQ+  ++GYDA   EYVDM   GIIDP+KV+RTAL DAAS++ L+ TTEA++ + P +
Sbjct:  290 DIAILTGGQVISEDIGVKLENVKLTDLGSCKRVKVDKDNSTIISGNGKKSEIEARCAQIKQQVGETTSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVEDALNATRAAAEEGIVVGGGCALLYASQSLDTLKVKGDDQKAGVALVAKALQAPIRQITLNAGVDGSVVVGKLLEQNKKNMGYDAQNEEYVDMFAKGIIDPVKVVRTALQDAASIAGLLVTTEAMIADKPDD 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_SINMW (60 kDa chaperonin 2 OS=Sinorhizobium medicae (strain WSM419) GN=groL2 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 2.089e-63
Identity = 121/239 (50.63%), Postives = 170/239 (71.13%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +I+EELG  LE   +D+LG  K+V + K+ T I+DGAG K  I  R  QI++ IE++TSDYD+EKLQERLAKL+GGVAV+++GG++E EV EKKDRV DAL+AT+AAVEEGI+PGGGV            +TAN DQ++G++I++ A++ PV  I             KL E+++   G++A  GE+ D+ + G+IDP KV+R AL DAASV+ L+ TTEA++ E PK+
Sbjct:  290 EDIAILTGGTVISEELGTKLESATIDILGRAKRVMVEKETTTIVDGAGSKADIGGRVAQIKAQIEDTTSDYDREKLQERLAKLAGGVAVIRVGGSTEIEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRVVSVLNGLATANDDQRVGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKEDFAFGWNAQTGEFGDLFQMGVIDPAKVVRAALQDAASVAGLLVTTEAMIAEKPKK 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_RHIME (60 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2 PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 2.729e-63
Identity = 119/239 (49.79%), Postives = 170/239 (71.13%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +I+EELG+ LE   +D LG  K++ + K+ T I+DGAG K+ I  R  QI++ IE++TSDYD+EKLQERLAKL+GGVAV+++GG++E EV EKKDRV DAL+AT+AAVEEGI+PGGGV            +TAN DQ++G++I++ A++ PV  I             KL E+ +   G++A  GE+ D+ + G+IDP KV+R AL DAAS++ L+ TTEA++ E PK+
Sbjct:  290 EDIAILTGGTVISEELGIKLENTTMDTLGRAKRIMVDKETTTIVDGAGSKEDIGGRVAQIKAQIEDTTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRVVSALNGLATANDDQRVGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKQDFAFGWNAQTGEFGDLFQMGVIDPAKVVRAALQDAASIAGLLVTTEAMIAEKPKK 528          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_RHILO3.223e-6451.9060 kDa chaperonin 1 OS=Rhizobium loti GN=groL1 PE=... [more]
CH603_RHIME4.210e-6451.6860 kDa chaperonin 3 OS=Rhizobium meliloti GN=groL3... [more]
CH602_RHISN4.210e-6451.6460 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR23... [more]
CH601_GLUDA5.498e-6452.4660 kDa chaperonin 1 OS=Gluconacetobacter diazotrop... [more]
CH601_RHISN7.181e-6451.6460 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR23... [more]
CH60_ZYMMO9.379e-6451.6460 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]
HSP60_YEAST1.225e-6352.08Heat shock protein 60, mitochondrial OS=Saccharomy... [more]
CH60_PELUB1.600e-6351.2660 kDa chaperonin OS=Pelagibacter ubique GN=groL P... [more]
CH602_SINMW2.089e-6350.6360 kDa chaperonin 2 OS=Sinorhizobium medicae (stra... [more]
CH602_RHIME2.729e-6349.7960 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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