DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 6.079e-63
Identity = 120/239 (50.21%), Postives = 169/239 (70.71%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG  I+E+LG+ LE V L+MLG  KKV I K++T I+DGAG K  I+ R  QI++ IE +TSDYD+EKLQERLAKL+GGVAV+++GGA+E EV E+KDRV DA++AT+AAVEEG++PGGGV            +  N DQK+G+ I++ A++ P+  I             ++ E+ +   G++A  GEY D+ + G+IDP+KV+R AL DAASV+ L+ TTEA+V + PK+
Sbjct:  290 QDIAILTGGTAISEDLGIKLENVTLEMLGRAKKVVIEKENTTIVDGAGSKDEIQGRVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGLLPGGGVALLRAAKALDNVTGENEDQKVGISIVRRAIEAPIRQIAENAGAEGSIIVGRVREKPDFGYGWNAQTGEYGDLYQMGVIDPVKVVRAALQDAASVAGLLITTEAMVADRPKK 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_ROSDO (60 kDa chaperonin 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL1 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 6.079e-63
Identity = 123/237 (51.90%), Postives = 164/237 (69.20%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 712
            QD+A+LTGG +I+E+LGM LE V +DMLGT KKV I+KD+T +++GAG+K  I+ R  QIR+ IE +TSDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+AAV+EGIV GGGV              AN DQ  G+ I++ AL+ P+  I             K+ E D+   G++A   EY D+   G+IDP KV+RTAL DA+SV+ L+ TTEA+V   P
Sbjct:  290 QDIAILTGGQVISEDLGMKLESVTIDMLGTAKKVAITKDETTVVNGAGEKAEIDARVSQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKALDGLQGANPDQNAGIAIVRRALEAPLRQIAENAGVDGSVVAGKIRESDDATFGFNAQTEEYGDLFSFGVIDPAKVVRTALEDASSVAGLLITTEAMVAVKP 526          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_TRYCR (Chaperonin HSP60, mitochondrial OS=Trypanosoma cruzi GN=HSP60 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.940e-63
Identity = 128/249 (51.41%), Postives = 170/249 (68.27%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEE-LGMDLEKVNLD--MLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGV---XXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A+  G  L+ EE  G++L+  N D  +LGT KK TI+KDDTV+L+G G+   ++ER E +R  I+  TSDY++EKLQERLAKLSGGVAV+K+GG SE EV EKKDR+TDAL +T+AAV+EGIVPGGGV               S+   DQ+ GVQII+NA++ P HTI             K+LE ++  +GYDA +  YV+M ++GIIDP +V+R A+ DA SV+SLM T EA +V+LPKE   A
Sbjct:  297 QDIAIFAGARLVGEEGSGLELDAENFDPAILGTVKKATITKDDTVLLNGGGESSMVKERVELLRGLIDGETSDYNREKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRITDALCSTRAAVQEGIVPGGGVALLRASKALDSLLGDSSLTADQRTGVQIIRNAVRLPAHTIVLNAGKEGAVVVEKVLENNDVTVGYDAQRDRYVNMFEAGIIDPARVVRVAITDAVSVASLMMTAEAAIVDLPKEETPA 545          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SPHWW (60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groL PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.940e-63
Identity = 127/243 (52.26%), Postives = 167/243 (68.72%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LT G+LI+E+LG+ LE V + MLGT K+VTI KD+T I+DGAG   +I+ R E IR  IE +TSDYD+EKLQERLAKL+GGVAV+K+GGA+E EV E+KDRV DAL+AT+AAVEEGIVPGGG               AN DQ  G+ II+ A+  PV  I              LL +++   G++AA   Y ++V +G+IDP KV+RTAL DAASV+ L+ TTEA + ELP++   A
Sbjct:  290 EDIAILTNGELISEDLGIKLENVTIGMLGTAKRVTIDKDNTTIVDGAGAADAIKGRVEAIRKQIEITTSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALLYATKALDGLKGANDDQTRGIDIIRRAISAPVKQIAQNAGQDGAVVAGNLLRENDETKGFNAATDVYENLVAAGVIDPTKVVRTALQDAASVAGLLITTEATIAELPEDKAPA 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.940e-63
Identity = 125/239 (52.30%), Postives = 167/239 (69.87%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QDLAVLTGG +I+E+LG+ LE V ++MLG  K+V+I KD+T I+DG G KK IE R  QIR  I++++SDYD+EKLQERLAKL+GGVAV+K+GGA+E EV E+KDRV DALNAT+AAVEEGIVPGGGV               N D+K G+ I++ AL+ P+  I              +L   +   G++A   EY D+V  G+IDP+KV+R+AL +AAS++SL+ TTEA + E PK+
Sbjct:  290 QDLAVLTGGQVISEDLGIKLENVGMEMLGKAKRVSIDKDNTTIVDGGGKKKEIEARVSQIRKQIDDTSSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALNATRAAVEEGIVPGGGVALLRSSKNIDVVG-LNDDEKAGIDIVRKALEAPIRQIAENAGVEGSVVVNTILNNKSRSYGFNAQTEEYGDLVAMGVIDPVKVVRSALQNAASIASLLITTEAGIAEAPKK 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.940e-63
Identity = 125/244 (51.23%), Postives = 169/244 (69.26%), Query Frame = 2
Query:    5 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLE---QDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKE 727
            D+AVLTGG  ITE+LG+ LE V LDMLG  +KV + K+ T I+ G GD + I+ R EQI+  I+ +TSDYD+EKLQERLAKLSGGVA++++G A+EAE+ EKK RV DA++ATKAAVEEGIVPGGGV               N DQ++G+ II+ A++TP+  I             K++E   +     G++AA GEYVDM ++GIIDP KV+RTA+ +AASV+  M T EA++ +LP+E K+
Sbjct:  291 DIAVLTGGQAITEDLGIKLESVTLDMLGQAEKVVVDKEHTTIIGGKGDPEQIKARIEQIKRQIQETTSDYDREKLQERLAKLSGGVAIIRVGAATEAELKEKKYRVEDAVHATKAAVEEGIVPGGGVALVRASEALEDLKGDNHDQQLGIDIIKKAVRTPLKQIAYNAGYDGSVVLEKVIELGKEKGVSWGFNAATGEYVDMYEAGIIDPTKVVRTAIENAASVAGTMLTAEALIADLPEEKKK 534          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ALTMD (60 kDa chaperonin OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=groL PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.940e-63
Identity = 125/239 (52.30%), Postives = 170/239 (71.13%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I+EE+G++LEKV L+ LGT K+V I+KD+T ++DG GD+++IE RC QI+  IE S+SDYDKEKLQERLAKLSGGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+VPGGGV            +  N DQ +GV++   A++ P+  I             ++   D  + GY+A    Y DM++ GI+DP KV R+AL  A+S++SLM TTEA+V ELPK+
Sbjct:  290 QDIAILTGGTVISEEIGLELEKVQLEDLGTAKRVVINKDNTTVVDGNGDQEAIEGRCAQIKGQIEESSSDYDKEKLQERLAKLSGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVPGGGVALVRAAAKLSELTGDNEDQTVGVKLALRAMEAPLRQISINSGAEASVVVNEVKNGDG-NYGYNAGNDTYGDMLEMGILDPTKVTRSALQFASSIASLMITTEAMVAELPKD 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH603_BURCM (60 kDa chaperonin 3 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL3 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.037e-62
Identity = 123/243 (50.62%), Postives = 171/243 (70.37%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTG  +I+EE G  L+K +L+ LG+ K+V + K+DT+I+DGAGD++ IE R + IR+ I+ +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIVPGGGV              AN DQ  G+QI+  AL+ P+  I             K+LE    + GY+AA GEY D+V++G++DP KV RTAL +AAS++ L+ TT+A V + PK+ K A
Sbjct:  290 EDIAILTGATVISEETGKQLQKASLEDLGSAKRVEVRKEDTIIIDGAGDQERIEARVKSIRTQIDETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSTATSLKGANSDQDAGIQIVLRALEAPLRVIASNAGDEPSVVIAKVLE-GKGNFGYNAATGEYGDLVEAGVVDPTKVTRTALQNAASIAGLILTTDATVADAPKDEKPA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_METCA (60 kDa chaperonin 1 OS=Methylococcus capsulatus GN=groL1 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.037e-62
Identity = 132/244 (54.10%), Postives = 170/244 (69.67%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+AVLTGG +I+E++G+ LEK  L  LGT KKV I+K++T I+DGAG  ++I+ R  QIR  IE++TSDYD+EKLQERLAKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV              AN DQ +G+ I + A++ P+  I             K+ E    + GY+AA GEY DMV  GI+DP KV R+AL +AASV+SLM TTEA+V E PKE  EAP
Sbjct:  290 EDIAVLTGGTVISEDIGLSLEKATLADLGTAKKVQITKENTTIIDGAGSSEAIQGRVAQIRKQIEDTTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRALAKLRDLKGANHDQDVGISIARRAMEEPLRQIVANAGDEPSVVLNKVAEGAG-NFGYNAATGEYGDMVAMGILDPAKVTRSALQNAASVASLMITTEAMVAEEPKE--EAP 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH603_RHILE (60 kDa chaperonin 3 OS=Rhizobium leguminosarum GN=groL3 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.354e-62
Identity = 119/237 (50.21%), Postives = 165/237 (69.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 712
            +D+AVLT G +I+E+LG+ L+ V LDMLG  K+V I K+ T I+DG+G+K +I+ R +QI++ IE +TSDYDKEKLQERLAKL+GGVAV+++GGA+E EV EKKDR+ DALNAT+AAVEEGIVPGGGV            +  N D   G+ I+  AL+ P+  I             KL   +N + G+DA    YVDM+++GI+DP KV+RTAL DA S+++L+ T E ++ ++P
Sbjct:  290 EDIAVLTSGQMISEDLGIKLDNVTLDMLGHAKRVLIDKESTTIIDGSGEKAAIQARIQQIKAQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGATETEVKEKKDRIDDALNATRAAVEEGIVPGGGVALLRAKSALTGLTGENADVTAGISIVLRALEAPIRQIADNAGFEGSIVVGKLAGSNNHNQGFDAQTETYVDMIEAGIVDPAKVVRTALQDAGSIAALLITAEVMIADIP 526          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_MESSB6.079e-6350.2160 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]
CH601_ROSDO6.079e-6351.9060 kDa chaperonin 1 OS=Roseobacter denitrificans (... [more]
CH60_TRYCR7.940e-6351.41Chaperonin HSP60, mitochondrial OS=Trypanosoma cru... [more]
CH60_SPHWW7.940e-6352.2660 kDa chaperonin OS=Sphingomonas wittichii (strai... [more]
CH60_HYPNA7.940e-6352.3060 kDa chaperonin OS=Hyphomonas neptunium (strain ... [more]
CH60_AQUAE7.940e-6351.2360 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH60_ALTMD7.940e-6352.3060 kDa chaperonin OS=Alteromonas macleodii (strain... [more]
CH603_BURCM1.037e-6250.6260 kDa chaperonin 3 OS=Burkholderia ambifaria (str... [more]
CH601_METCA1.037e-6254.1060 kDa chaperonin 1 OS=Methylococcus capsulatus GN... [more]
CH603_RHILE1.354e-6250.2160 kDa chaperonin 3 OS=Rhizobium leguminosarum GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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