DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_MOUSE (60 kDa heat shock protein, mitochondrial OS=Mus musculus GN=Hspd1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.721e-62
Identity = 128/243 (52.67%), Postives = 169/243 (69.55%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEE-LGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKE 727
            +D+A+ TGG +  EE L ++LE V    LG   +V ++KDD ++L G GDK  IE+R ++I   ++ +TS+Y+KEKL ERLAKLS GVAVLK+GG S+ EV EKKDRVTDALNAT+AAVEEGIV GGG               AN DQKIG++II+ ALK P  TI             K+L Q ++++GYDA  G++V+MV+ GIIDP KV+RTAL+DAA V+SL+TT EA+V E+PKE K+
Sbjct:  314 KDMAIATGGAVFGEEGLNLNLEDVQAHDLGKVGEVIVTKDDAMLLKGKGDKAHIEKRIQEITEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPANEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKIL-QSSSEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKD 555          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_EUGGR (Chaperonin CPN60, mitochondrial OS=Euglena gracilis GN=HSP60 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.721e-62
Identity = 127/240 (52.92%), Postives = 167/240 (69.58%), Query Frame = 2
Query:    5 DLAVLTGGDLITEELGMDLEK-VNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXS---TANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 712
            D+A+ TGG++  EELGM+LE+  +  +LG  KKV++ KD T+IL+GAGD K++EER E I+  +  + S Y+KEKL ERLAKLSGGVAV+K+GGAS+ EVGEKKDRVTDALNAT+AAV EGIVPGGG             +   T   DQK GV+I+ +A+K P  TI             +LL +     GYDA +G+YV+M ++GIIDP KV++TALVDAASV+ LM TTEA + ++P
Sbjct:  304 DVAIFTGGEVYNEELGMNLEQHFDHRILGFAKKVSVGKDQTIILNGAGDPKAVEERKELIQGMLGKTDSSYEKEKLNERLAKLSGGVAVIKVGGASDVEVGEKKDRVTDALNATRAAVSEGIVPGGGAALLYASSALAELAADPTLTEDQKTGVRIVMSAIKLPAITIVKNAGGEGAVVIHQLLAEKKMQQGYDAQQGKYVNMFEAGIIDPAKVVKTALVDAASVAGLMITTEAAITDIP 543          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CHICK (60 kDa heat shock protein, mitochondrial OS=Gallus gallus GN=HSPD1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.721e-62
Identity = 127/243 (52.26%), Postives = 169/243 (69.55%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEE-LGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKE 727
            +D+A+ TGG +  EE L +++E +     G   +V ++KDDT++L G G+K  IE+R ++I   +E +TS+Y+KEKL ERLAKLS GVAVLK+GG S+ EV EKKDRVTDALNAT+AAVEEGIVPGGG               AN DQKIG++II+  LK P  TI             K+L Q ++++GYDA  GE+V+MV+ GIIDP KV+RTAL+DAA V+SL++T EA+V E+PKE KE
Sbjct:  314 KDMAIATGGAVFGEEGLSLNVEDIQPHDFGKVGEVIVTKDDTMLLKGKGEKAQIEKRIQEIIEQLEVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVPGGGCALLRCIPALDALKPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIL-QSSSEVGYDAMLGEFVNMVEKGIIDPTKVVRTALMDAAGVASLLSTAEAVVTEVPKEEKE 555          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_BURP6 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 668) GN=groL2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.721e-62
Identity = 123/239 (51.46%), Postives = 166/239 (69.46%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +ITEE G+ LEK  L  LG  K++ + K++T ++DGAGDK +I+ R +QIR+ I  +TSDYD+EKLQER+AKL+GGVAV+K+GGA+E EV EKKDRV DAL+AT+AAVEEGIVPGGGV            + AN DQK G+ I+  AL+ P+  I              +      + GY+AA GEY D+V+SG++DP KV RTAL +AAS++ L+ TT+A V E PK+
Sbjct:  290 EDIAILTGGQVITEETGLTLEKATLQELGRAKRIEVGKENTTLIDGAGDKPNIDARVKQIRAQIAEATSDYDREKLQERVAKLAGGVAVIKVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALIRVKQAIAALAGANADQKAGISIVLRALEEPLRQIVANAGEEASVVVATVAAGQG-NYGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATVHEAPKD 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_BURCM (60 kDa chaperonin 2 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.721e-62
Identity = 124/243 (51.03%), Postives = 167/243 (68.72%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG ++ EE G+ LEK  L  LG  K++ + K++T ++DGAGD K+IE R +QIR  I+ +TSDYD+EKLQER+AKL+GGVAV+K+GGA+E EV EKKDRV DAL+AT+AAVEEGIVPGGGV              AN DQ  G++I+  AL+ P+  I             K+ E  + + GY+A  GEY D+V+SG++DP KV RTAL +AASV+ L+ TT+A V E PK+   A
Sbjct:  290 EDIAILTGGQVVAEETGLALEKATLAELGQAKRIEVGKENTTVIDGAGDAKNIEARVKQIRVQIDEATSDYDREKLQERVAKLAGGVAVIKVGGATEIEVKEKKDRVDDALHATRAAVEEGIVPGGGVALIRVRQAIRELKGANADQDAGIKIVLRALEEPLRQIVTNAGEEASVVVAKVAE-GSGNFGYNAQTGEYGDLVESGVLDPTKVTRTALQNAASVAGLLLTTDATVFEAPKDAAPA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_NITOC (60 kDa chaperonin OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=groL PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 8.778e-62
Identity = 123/244 (50.41%), Postives = 169/244 (69.26%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+AVLTGG +I+EE+G+ L+KV LD LG  KK+T++K++T I+DGAG    I+ R EQ+R  IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV              AN DQ +G+ I + A++ P+  I             + ++    + GY+AA GE+ DM+  GI+DP KV RTAL +AASV+ LM TTEA++ E PK+ + +P
Sbjct:  290 EDIAVLTGGTVISEEVGLSLDKVTLDDLGRAKKITVNKENTTIVDGAGSADDIKARVEQVRIQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEMEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRALLGIKDLKGANHDQDVGINIARRAMEEPLRQIVNNSGEEASVIVNQ-IKGGEGNYGYNAATGEFGDMIAMGILDPTKVSRTALQNAASVAGLMITTEAMIAEAPKDEEASP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CRIGR (60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.146e-61
Identity = 127/243 (52.26%), Postives = 169/243 (69.55%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEE-LGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKE 727
            +D+A+ TGG +  EE L ++LE V    LG   +V ++KDD ++L G G+K  IE+R ++I   +E +TS+Y+KEKL ERLAKLS GVAVLK+GG S+ EV EKKDRVTDALNAT+AAVEEGIV GGG               +N DQKIG++II+ ALK P  TI             K+L Q ++++GYDA  G++V+MV+ GIIDP KV+RTAL+DAA V+SL+TT EA+V E+PKE K+
Sbjct:  314 KDMAIATGGAVFGEEGLNLNLEDVQAHDLGKVGEVIVTKDDAMLLKGKGEKAQIEKRIQEITEQLEITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPSNEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKIL-QSSSEIGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKD 555          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH605_BURXL (60 kDa chaperonin 5 OS=Burkholderia xenovorans (strain LB400) GN=groL5 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.146e-61
Identity = 123/243 (50.62%), Postives = 169/243 (69.55%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG +I EE G+ LEK  L  LG  K++ + K++T ++DGAG+ K+IE R +QIR+ I+ ++SDYD+EKLQER+AKL+GGVAV+K+GGA+E EV EKKDRV DAL+AT+AAVEEGIVPGGGV              AN DQ  G++I+  AL+ P+  I             K+ E  + + GY+A  GEY D+V+SG++DP KV RTAL +AASV++L+ TT+A V E PK+   A
Sbjct:  290 EDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTVIDGAGEHKNIEARVKQIRAQIDEASSDYDREKLQERVAKLAGGVAVIKVGGATEIEVKEKKDRVDDALHATRAAVEEGIVPGGGVALIRVRNAISGLKGANADQDAGIKIVLRALEEPLRQIVTNAGEEASVVVAKVAE-GSGNFGYNAQTGEYGDLVESGVLDPTKVTRTALQNAASVAALLLTTDATVYEAPKDPAPA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_BURTA (60 kDa chaperonin 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=groL2 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.146e-61
Identity = 123/243 (50.62%), Postives = 168/243 (69.14%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG +I EE G+ LEK  L  LG  K++ + K++T ++DGAGDK +I+ R +QIR+ I ++TSDYD+EKLQER+AKL+GGVAV+K+GGA+E EV EKKDRV DAL+AT+AAVEEGIVPGGGV            + AN DQK G+ I+  AL+ P+  I               +   + + GY+AA GEY D+V+SG++DP KV RTAL +AAS++ L+ TT+A V E PK+   A
Sbjct:  290 EDIAILTGGQVIAEETGLTLEKATLQELGRAKRIEVGKENTTLIDGAGDKPNIDARVKQIRAQIADATSDYDREKLQERVAKLAGGVAVIKVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALIRVKQAIAELTGANVDQKAGINIVLRALEEPLRQI-VANAGEEASVVVATVAAGSGNYGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATVHEAPKDAPPA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_ANADF (60 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.146e-61
Identity = 126/244 (51.64%), Postives = 168/244 (68.85%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I EELG+ LE+V+L  LG  K+++I KD+T I+DGAG K  IE R + IR+ IE +TSDYD+EKLQERLAKL GGVAV+ +G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV              +   +K G+ I++ AL+ P+  I             K+ E  +T+ G++AA G+Y D+VKSG+IDP KV R+AL +A+SV+SLM TT A+V E PKE   AP
Sbjct:  290 EDIAILTGGRMIAEELGLKLEQVSLKDLGRAKRISIDKDNTTIVDGAGQKADIEARVKTIRAQIEETTSDYDREKLQERLAKLVGGVAVINVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVAYLRAVKALEGVKVSE-GEKFGLDIVRRALEEPLRQIAGNGGYEASIVVNKVKESKDTNFGFNAATGDYEDLVKSGVIDPTKVSRSALQNASSVASLMLTTMALVAEKPKEESAAP 532          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_MOUSE6.721e-6252.6760 kDa heat shock protein, mitochondrial OS=Mus mu... [more]
CH60_EUGGR6.721e-6252.92Chaperonin CPN60, mitochondrial OS=Euglena gracili... [more]
CH60_CHICK6.721e-6252.2660 kDa heat shock protein, mitochondrial OS=Gallus... [more]
CH602_BURP66.721e-6251.4660 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]
CH602_BURCM6.721e-6251.0360 kDa chaperonin 2 OS=Burkholderia ambifaria (str... [more]
CH60_NITOC8.778e-6250.4160 kDa chaperonin OS=Nitrosococcus oceani (strain ... [more]
CH60_CRIGR1.146e-6152.2660 kDa heat shock protein, mitochondrial OS=Cricet... [more]
CH605_BURXL1.146e-6150.6260 kDa chaperonin 5 OS=Burkholderia xenovorans (st... [more]
CH602_BURTA1.146e-6150.6260 kDa chaperonin 2 OS=Burkholderia thailandensis ... [more]
CH602_ANADF1.146e-6151.6460 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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