DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BARHE (60 kDa chaperonin OS=Bartonella henselae GN=groL PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.564e-63
Identity = 125/244 (51.23%), Postives = 168/244 (68.85%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LT G +I+E++G+ LE V LDMLG  KKV ISK++T I+DGAG K  I  R  QI+  IE +TSDYD+EKLQERLAKL+GGVAV+++GGA+E EV EKKDRV DALNAT+AAVEEGIV GGG               +N DQ+ G+ I++ AL+ P   I             K+LE +    GY+ A GE+ D++  GI+DP+KV+R+AL +AAS++SL+ TTEA+V E+PK+    P
Sbjct:  290 EDIAILTSGQVISEDVGIKLENVTLDMLGRAKKVNISKENTTIIDGAGQKSEINARVNQIKVQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVAGGGTALLRAANALTVKG-SNPDQEAGINIVRRALQAPARQIATNAGEEAAIIVGKVLENNADTFGYNTATGEFGDLIALGIVDPVKVVRSALQNAASIASLLITTEAMVAEVPKKDTPVP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_THEYD (60 kDa chaperonin OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=groL PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 4.655e-63
Identity = 123/244 (50.41%), Postives = 170/244 (69.67%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+E++G+ LE V ++ LG  KK+ I KD+T I++GAGD + I+ R +QI+  I+ +TSDYD+EKLQERLAKL+GGVA + +G A+EAE+ EKK RV DALNAT+AAVEEGIVPGGGV               N DQ++G +I++ AL+ P+  I             K+ E  N + GYDA   ++VDM+++GIIDP KV RTAL +AASV+ LM TTE +V E+P+E K+ P
Sbjct:  290 EDIAILTGGTVISEDIGLKLENVKVEDLGKAKKIIIDKDNTTIVEGAGDPQKIQARIKQIKVQIDETTSDYDREKLQERLAKLAGGVARINVGAATEAEMKEKKARVEDALNATRAAVEEGIVPGGGVALLRCQKALEKIKFENHDQQLGAEIVKKALEEPIKQIIANAGVEATLIVEKVKENKNINYGYDAYAEKFVDMMEAGIIDPTKVTRTALQNAASVAGLMLTTEVLVAEIPEEEKKPP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_RHOS1 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=groL PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 4.655e-63
Identity = 124/243 (51.03%), Postives = 167/243 (68.72%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A+LTGG +I+E+LGM LE V +DMLG  KK++I+KD+T I+DG GDK  I+ R  QIR+ IE ++SDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+AAV+EGIV GGGV            +  N DQ  G+ I++ AL+ P+  I             K+ E +    G++A   EY DM K G+IDP KV+RTAL DAASV+SL+ TTEA++ + P+    A
Sbjct:  290 QDIAILTGGQVISEDLGMKLENVTIDMLGRAKKISINKDNTTIVDGNGDKAEIDARVAQIRNQIEETSSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQGGKALDGLTGENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIADKPEPKSPA 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BART1 (60 kDa chaperonin OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=groL PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 4.655e-63
Identity = 125/244 (51.23%), Postives = 168/244 (68.85%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LT G +I+E++G+ LE V LDMLG  KKV ISK++T I+DGAG K  I  R  QI++ IE +TSDYD+EKLQERLAKL+GGVAV+++GGA+E EV EKKDRV DALNAT+AAVEEGIV GGG                N DQ+ G+ I++ AL+ P   I             K+LE +    GY+ A GE+ D++  GI+DP+KV+R+AL +AAS++SL+ TTEA+V E+PK+    P
Sbjct:  290 EDIAILTSGQVISEDVGIKLENVTLDMLGRAKKVNISKENTTIIDGAGQKAEITARVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVAGGGTALLRAASALTVKG-GNPDQEAGINIVRRALQAPARQIATNAGEEAAIIVGKVLENNADTYGYNTATGEFGDLIALGIVDPVKVVRSALQNAASIASLLITTEAMVAEMPKKDTPMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_RHOSH (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=groL1 PE=1 SV=4)

HSP 1 Score: 241.891 bits (616), Expect = 4.655e-63
Identity = 124/243 (51.03%), Postives = 167/243 (68.72%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A+LTGG +I+E+LGM LE V +DMLG  KK++I+KD+T I+DG GDK  I+ R  QIR+ IE ++SDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+AAV+EGIV GGGV            +  N DQ  G+ I++ AL+ P+  I             K+ E +    G++A   EY DM K G+IDP KV+RTAL DAASV+SL+ TTEA++ + P+    A
Sbjct:  290 QDIAILTGGQVISEDLGMKLENVTIDMLGRAKKISINKDNTTIVDGNGDKAEIDARVAQIRNQIEETSSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQGGKALDGLTGENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIADKPEPKSPA 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_RHOS4 (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=groL1 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 4.655e-63
Identity = 124/243 (51.03%), Postives = 167/243 (68.72%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A+LTGG +I+E+LGM LE V +DMLG  KK++I+KD+T I+DG GDK  I+ R  QIR+ IE ++SDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+AAV+EGIV GGGV            +  N DQ  G+ I++ AL+ P+  I             K+ E +    G++A   EY DM K G+IDP KV+RTAL DAASV+SL+ TTEA++ + P+    A
Sbjct:  290 QDIAILTGGQVISEDLGMKLENVTIDMLGRAKKISINKDNTTIVDGNGDKAEIDARVAQIRNQIEETSSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQGGKALDGLTGENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIADKPEPKSPA 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_AZOC5 (60 kDa chaperonin 1 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL1 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 4.655e-63
Identity = 124/244 (50.82%), Postives = 169/244 (69.26%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+E+LG+ LE V L  LG  KKV + K+ T I+DG G+K  IE R  QI++ IE ++SDYD+EKLQERLAKL+GGVAV+++GG++E EV EKKDRV DALNAT+AAVEEGIVPGGGV            S+ N D   G++I+  AL+ P+  I             K+LE +  + G++A   +YVD+V  G++DP KV+RTAL DA+SV+SL+ TTEA++ ELPK+    P
Sbjct:  290 EDIAILTGGQVISEDLGIKLENVTLAQLGRAKKVILEKEKTTIVDGVGEKAEIEARVAQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAVEEGIVPGGGVALLRAKKAVEALSSENPDIAAGIKIVLRALEAPIRQIAENSGVEGSIVVGKVLESEG-NFGFNAQTEQYVDLVAEGVVDPAKVVRTALQDASSVASLLVTTEALIAELPKKDAGMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: HSP60_AJECA (Heat shock protein 60, mitochondrial OS=Ajellomyces capsulata GN=HSP60 PE=3 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 6.079e-63
Identity = 130/242 (53.72%), Postives = 166/242 (68.60%), Query Frame = 2
Query:    5 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIEN-STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG-VXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDL--GYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            D+ +LT   + T+EL M LEK   DMLG+   +TI+K+DT+IL+G G K SI +RCEQIR  I + +TSDY+KEKLQERLAKLSGGVAV+K+GGASE EVGEKKDRV DALNAT+AAVEEGI+PGGG                 + DQ   +  + +A+  P  TI             KL ++  +D   G+D+AKGEYVDM+ SGI+DPLKV+RTALVDA+ V+SL+ TTE  +VE P+E
Sbjct:  328 DIGILTNATVFTDELDMKLEKATADMLGSTGSITITKEDTIILNGDGSKDSIAQRCEQIRGVIADPTTSDYEKEKLQERLAKLSGGVAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGILPGGGTALLKAAANGLASVKPTSSDQLRRISSLVSAITRPARTIVENAGLEGSVIVGKLTDEHASDFNRGFDSAKGEYVDMIASGIVDPLKVVRTALVDASGVASLLGTTEVAIVEAPEE 569          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_THISH (60 kDa chaperonin OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=groL PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 6.079e-63
Identity = 126/244 (51.64%), Postives = 171/244 (70.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G+ LEK +LD LG  K++ ++K+++ I+DGAG    I+ R EQIR+ IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV              AN DQ IG+ I + A++ P+  I              ++E    + GY+AA GEY DM++ GI+DP KV R+AL +AASVS L+ TTEA+V ELPK+   AP
Sbjct:  290 QDIAILTGGQVISEEVGLSLEKASLDDLGQAKRIVVTKENSTIIDGAGKPDEIKGRVEQIRAQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQALKSLKGANHDQDIGIAIARRAMEEPLRQIVSNCGEEPSVVLNNVVE-GKGNYGYNAATGEYGDMIEMGILDPTKVTRSALQNAASVSGLIITTEAMVAELPKKGDSAP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_RHILO (60 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 6.079e-63
Identity = 123/244 (50.41%), Postives = 166/244 (68.03%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG  I+E+LG+ LE V L+MLG  KKV I K++T I+DGAG K  I+ R  QI+S IE +TSDYDKEKLQERLAKL+GGVAV+++GG++E EV E+KDRV DA++AT+AAVEEG++PGGGV               N DQK G++I++ A++ PV  I             KL E+     G++A    + D+   G+IDP+KV+RTAL DAASV+ L+ TTEA+V E PK+    P
Sbjct:  290 EDIAILTGGTAISEDLGIKLENVTLEMLGRAKKVVIEKENTTIVDGAGSKDEIQGRVSQIKSQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDAMHATRAAVEEGVLPGGGVALLRAAKALDSVQAENEDQKHGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKPEFGWGWNAQTNAFGDLYNEGVIDPVKVVRTALQDAASVAGLLVTTEAMVAEKPKKEPAVP 533          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BARHE3.564e-6351.2360 kDa chaperonin OS=Bartonella henselae GN=groL P... [more]
CH60_THEYD4.655e-6350.4160 kDa chaperonin OS=Thermodesulfovibrio yellowsto... [more]
CH60_RHOS14.655e-6351.0360 kDa chaperonin OS=Rhodobacter sphaeroides (stra... [more]
CH60_BART14.655e-6351.2360 kDa chaperonin OS=Bartonella tribocorum (strain... [more]
CH601_RHOSH4.655e-6351.0360 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=... [more]
CH601_RHOS44.655e-6351.0360 kDa chaperonin 1 OS=Rhodobacter sphaeroides (st... [more]
CH601_AZOC54.655e-6350.8260 kDa chaperonin 1 OS=Azorhizobium caulinodans (s... [more]
HSP60_AJECA6.079e-6353.72Heat shock protein 60, mitochondrial OS=Ajellomyce... [more]
CH60_THISH6.079e-6351.6460 kDa chaperonin OS=Thioalkalivibrio sp. (strain ... [more]
CH602_RHILO6.079e-6350.4160 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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