DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_ERYLH (60 kDa chaperonin 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL2 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 6.495e-65
Identity = 127/239 (53.14%), Postives = 167/239 (69.87%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LT G++I+E+LG+ LE V L MLG  K+VTI KD+T I+DGAGD+  I+ R  +IR+ I+N+TSDYD+EKLQERLAKL+GGVAV+K+GGASE EV E+KDRV DAL+AT+AAVEEGIVPGGG                N DQ  G+ I++ A+  PV  I              LL +DN   G++AA   Y D+VK+G+IDP KV+R AL DAASV+ L+ TTEA + E+P++
Sbjct:  290 QDIAILTKGEMISEDLGIKLENVTLGMLGEAKRVTIDKDNTTIVDGAGDEADIKARVNEIRTQIDNTTSDYDREKLQERLAKLAGGVAVIKVGGASEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALLYATKVLEGLKGENDDQTRGIDIVRKAIVAPVRQIATNAGHDGAVISGNLLREDNESQGFNAATDTYEDLVKAGVIDPTKVVRVALQDAASVAGLLITTEAAISEVPED 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PARDP (60 kDa chaperonin OS=Paracoccus denitrificans (strain Pd 1222) GN=groL1 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 8.483e-65
Identity = 129/238 (54.20%), Postives = 166/238 (69.75%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            QD+A+LTGG +I+E+LGM LE V +DMLG  KKV+I+KD+T I+DGAG+K  IE R  QIR  IE +TSDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+AAV+EGIV GGGV            S AN DQ  G+ II+ AL+ P+  I             K+ E  +   G++A   EY DM K G+IDP KV+RTAL DAASV+ L+ TTEA++ E P+
Sbjct:  290 QDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPE 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PARDE (60 kDa chaperonin OS=Paracoccus denitrificans GN=groL PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 8.483e-65
Identity = 129/238 (54.20%), Postives = 166/238 (69.75%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            QD+A+LTGG +I+E+LGM LE V +DMLG  KKV+I+KD+T I+DGAG+K  IE R  QIR  IE +TSDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+AAV+EGIV GGGV            S AN DQ  G+ II+ AL+ P+  I             K+ E  +   G++A   EY DM K G+IDP KV+RTAL DAASV+ L+ TTEA++ E P+
Sbjct:  290 QDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPE 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_MAGSM (60 kDa chaperonin OS=Magnetococcus sp. (strain MC-1) GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 8.483e-65
Identity = 127/245 (51.84%), Postives = 172/245 (70.20%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGV-XXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A LTGG L++E++G+ LE V +DMLG  K + ++K+DT I+DGAGD ++I+ R  QIR+ IE ++SDYD+EKLQERLAKL+GGVAV+K+GGA+E EV E+KDRV DAL+AT+AAVEEGIVPGGGV               AN DQ++G+ I+  AL+ P+  I             +++E   T+ G++AA G Y D+V SG+IDP KV+R AL  AASV+ LM TTEA+V ELPK+    P
Sbjct:  290 EDIATLTGGVLVSEDVGVKLENVTMDMLGMAKSIVVTKEDTTIIDGAGDHEAIKARVNQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGVALLRAREASLTNLQGANHDQQVGINIVTRALEEPLRIIASNAGAEGSVVVNRVVETKETNFGFNAATGVYEDLVASGVIDPAKVVRHALQAAASVAGLMITTEAMVAELPKDEPAMP 534          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.447e-64
Identity = 124/244 (50.82%), Postives = 172/244 (70.49%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LT G +I+E+LG+ LE V L+MLG  KK+T+ K++T I+DG G K+ I  R  QI++ IE +TSDYD+EKLQERLAKL+GGVAV+++GG++E EV EKKDRV DAL+AT+AAVEEGI+PGGGV             TAN DQ++GV+I++ AL+ P   I             KL E+ +   G++A  GE+ D+   G+IDP KV+RTAL DA+S++ L+ TTEA++ E PK  K+AP
Sbjct:  290 EDIAILTAGTVISEDLGIKLENVTLNMLGRAKKITVEKENTTIIDGVGSKEEISGRIAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDNIKTANDDQRVGVEIVRRALEAPARQIAENAGAEGSVVVGKLREKSDFSYGWNAQTGEFGDLYAQGVIDPAKVVRTALQDASSIAGLLVTTEAMIAEKPK--KDAP 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_SPHAL (60 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=groL1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.890e-64
Identity = 129/244 (52.87%), Postives = 171/244 (70.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LT G++I+E+LG+ LE V L+MLG  K+VTI KD+T I+DGAGD ++I+ R EQIR+ IE +TSDYD+EKLQERLAKL+GGVAV+K+GGA+E EV E+KDRV DAL+AT+AAVEEGIVPGGG               AN DQ  G+ II+ A++TP+  I              LL   + + G++AA   Y ++  +G+IDP KV+RTAL DAASV+ L+ TTEA V ELP++    P
Sbjct:  290 QDIAILTKGEMISEDLGIKLENVTLNMLGQAKRVTIDKDNTTIVDGAGDAEAIKGRVEQIRAQIETTTSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALLYATKALEGLKGANDDQTRGIDIIRKAIETPLRQIAANAGHDGAVVAGNLLRVGDVEQGFNAATDVYENLKAAGVIDPTKVVRTALQDAASVAGLLITTEAAVSELPEDKPAMP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.468e-64
Identity = 124/244 (50.82%), Postives = 168/244 (68.85%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+E+LGM LE V +DMLGT KK+ I+KD+T I+DGAG+K  IE R  QIR+ IE +TSDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+AAV+EG++ GGGV            +  N DQ  G+ I++ AL+ P+  I             K+ E ++ + G++A   EY DM   G+IDP KV RTAL DAAS++ L+ TTEA+V + P +   AP
Sbjct:  290 QDIAILTGGQVISEDLGMKLESVTMDMLGTAKKIQITKDETTIVDGAGEKAEIEARVAQIRAQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGVIVGGGVALVQAGKSLEGLTGVNADQNAGIAIVRRALEAPLRQIAENAGVDGAVVAGKIRESEDKNFGFNAQTEEYGDMFSFGVIDPAKVTRTALEDAASIAGLLITTEAMVADKPAKEGAAP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BRUO2 (60 kDa chaperonin OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=groL PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.468e-64
Identity = 126/239 (52.72%), Postives = 167/239 (69.87%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +I+E+LG+ LE V LDMLG  KKV+ISK++T I+DGAG K  I+ R  QI+  IE +T DYD+EKLQERLAKL+GGVAV+++GGA+E EV EKKDRV DALNAT+AAVEEGIV GGG                N DQ+ G+ I++ A++ P   I             K+LE  +   GY+ A GEY D++  GI+DP+KV+RTAL +AASV+ L+ TTEA++ ELPK+
Sbjct:  290 EDIAILTGGQVISEDLGIKLESVTLDMLGRAKKVSISKENTTIVDGAGQKAEIDARVGQIKQQIEETTLDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKG-VNADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKK 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ACEP3 (60 kDa chaperonin OS=Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) GN=groL PE=3 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 2.468e-64
Identity = 130/244 (53.28%), Postives = 173/244 (70.90%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+E+LG+ LE V L+MLGT KKV I K++T I+DGAG    I+ R +QIR+ IE ++SDYD+EKLQERLAKL+GGVAV+++GG++E EV E+KDRV DAL+AT+AAVEEGIVPGGG                N DQ++G  II+ AL+ P+  I             K+LE  + + G+DA  GEY ++V++GIIDP KV+RTAL DAASV+ L+ TTEA+V E P E K AP
Sbjct:  290 EDIAILTGGQVISEDLGIKLETVTLNMLGTAKKVHIDKENTTIVDGAGKADDIKGRVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALARATLKLEGLHYHNDDQRVGGDIIRRALQAPLRQIAHNAGEDGAVIANKVLENSDYNFGFDAQAGEYKNLVEAGIIDPAKVVRTALQDAASVAGLLITTEAMVAERP-EKKAAP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_DINSH (60 kDa chaperonin OS=Dinoroseobacter shibae (strain DFL 12) GN=groL PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 3.223e-64
Identity = 126/237 (53.16%), Postives = 166/237 (70.04%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 712
            QD+A+LTGG +I+E+LGM LE V +DMLG+ K+V+I+KD+T I+DGAG K  IE R  QIR+ IE +TSDYD+EKLQER+AKL+GGVAV+++GG +E EV E+KDRV DALNAT+AAV+EGIV GGGV              AN DQ IG+ I++ AL+ P+  I             K+ E  +   G++A   EY DM K G+IDP KV+RTAL DAAS++ L+ TTEA+V + P
Sbjct:  290 QDIAILTGGQVISEDLGMKLESVTIDMLGSAKRVSITKDETTIVDGAGAKAEIEARVAQIRNQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQAAKHLDGLEGANNDQNIGINIVRKALEAPLRQIAENAGVDGSVVAGKIRESSDLAFGFNAQTEEYGDMFKFGVIDPAKVVRTALQDAASIAGLLITTEAMVADKP 526          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ERYLH6.495e-6553.1460 kDa chaperonin 2 OS=Erythrobacter litoralis (st... [more]
CH60_PARDP8.483e-6554.2060 kDa chaperonin OS=Paracoccus denitrificans (str... [more]
CH60_PARDE8.483e-6554.2060 kDa chaperonin OS=Paracoccus denitrificans GN=g... [more]
CH60_MAGSM8.483e-6551.8460 kDa chaperonin OS=Magnetococcus sp. (strain MC-... [more]
CH604_RHIEC1.447e-6450.8260 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]
CH601_SPHAL1.890e-6452.8760 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=... [more]
CH60_SILST2.468e-6450.8260 kDa chaperonin OS=Silicibacter sp. (strain TM10... [more]
CH60_BRUO22.468e-6452.7260 kDa chaperonin OS=Brucella ovis (strain ATCC 25... [more]
CH60_ACEP32.468e-6453.2860 kDa chaperonin OS=Acetobacter pasteurianus (str... [more]
CH60_DINSH3.223e-6453.1660 kDa chaperonin OS=Dinoroseobacter shibae (strai... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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