DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_RHIL3 (60 kDa chaperonin OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.769e-62
Identity = 119/237 (50.21%), Postives = 166/237 (70.04%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 712
            +D+AVLT G +I+E+LG+ LE V LDMLG  K+V I K+ T I+DG+G+K +I+ R +QI++ IE++TSDYDKEKLQERLAKL+GGVAV+++GGA+E EV EKKDR+ DALNAT+AAVEEGIVPGGGV            +  N D   G+ I+  AL+ P+  I             KL   ++ + G+DA    YVDM+++GI+DP KV+RTAL DA S+++L+ T E ++ ++P
Sbjct:  290 EDIAVLTAGQMISEDLGIKLENVTLDMLGHAKRVLIDKESTTIIDGSGEKAAIQARIQQIKAQIEDTTSDYDKEKLQERLAKLAGGVAVIRVGGATETEVKEKKDRIDDALNATRAAVEEGIVPGGGVALLRAKSALTGLTGENADVTAGISIVLRALEAPIRQIVDNAGFEGSIVVGKLAGSNDHNQGFDAQTETYVDMIEAGIVDPAKVVRTALQDAGSIAALLITAEVMIADIP 526          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_METSS (60 kDa chaperonin OS=Methylovorus sp. (strain SS1 / DSM 11726) GN=groL PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.769e-62
Identity = 124/243 (51.03%), Postives = 172/243 (70.78%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTG  +I+EE G  LEK +L+ LG  K+V + K++T+I+DGAG++K+IE R + I++ I+ STSDYD+EKLQER+AKLSGGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIVPGGGV               N DQ  G++I+  A++ P+  I             K+L   + + GY+AA GEY D+V++G++DP KV RTAL +AASV+SL+ TT+A + ELPKE K A
Sbjct:  290 EDIAILTGATVISEETGKQLEKASLEDLGRAKRVELQKENTIIIDGAGEQKAIEARVKAIQAQIDESTSDYDREKLQERVAKLSGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSRIVNLKGDNGDQDAGIRIVLRAIEAPLRAIAANAGDEPSVVINKVL-AGSGNFGYNAATGEYADLVETGVVDPTKVTRTALQNAASVASLILTTDASIAELPKEEKAA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_GRAFK (60 kDa chaperonin OS=Gramella forsetii (strain KT0803) GN=groL PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.769e-62
Identity = 125/239 (52.30%), Postives = 167/239 (69.87%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +I+EE G  LE   +DMLGT +KV I KD+T +++GAGD K+I+ER  QI++ IE++TSDYD+EKLQERLAKL+GGVAVL +G ASE E+ EKKDRV DAL+AT+AAVEEGIV GGGV             T N D+  GV+I+  A+++P+ TI             K+LE    D GYDA    YVDM+K+GIIDP KV R AL +AASV+ ++ TTE  + ++P++
Sbjct:  290 EDIAILTGGTVISEERGFSLENATIDMLGTAEKVAIDKDNTTVVNGAGDDKAIKERVNQIKAQIESTTSDYDREKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQVVLSKIKTENPDEATGVKIVSKAIESPLRTIVENAGGEGSVVINKVLE-GKKDFGYDAKTETYVDMLKAGIIDPKKVTRVALENAASVAGMILTTECALTDIPED 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BARQU (60 kDa chaperonin OS=Bartonella quintana GN=groL PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.769e-62
Identity = 124/244 (50.82%), Postives = 168/244 (68.85%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LT G +I+E++G+ LE V LDMLG  KKV ISK++T I+DGAG K  I  R  QI+  IE +TSDYD+EKLQERLAKL+GGVAV+++GGA+E EV EKKDRV DALNAT+AAVEEGIV GGG               +N DQ+ G+ I++ AL+ P   I             K+LE +    GY+ A G++ D++  GI+DP+KV+R+AL +AAS++SL+ TTEA+V E+PK+    P
Sbjct:  290 EDIAILTSGQVISEDVGIKLENVTLDMLGRAKKVNISKENTTIIDGAGKKAEINARVNQIKVQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVAGGGTALLRAANALAIKG-SNPDQEAGINIVRRALQAPARQIATNAGEEAAIIVGKVLENNADTFGYNTATGQFGDLIALGIVDPVKVVRSALQNAASIASLLITTEAMVAEVPKKDTPMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH604_SINMW (60 kDa chaperonin 4 OS=Sinorhizobium medicae (strain WSM419) GN=groL4 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.769e-62
Identity = 121/239 (50.63%), Postives = 167/239 (69.87%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+AVLT G +I+E++G+ LE V LDMLG  ++V I KD T I+DG+GDK SI+    QI++ IE +TSDYDKEKLQERLAKL+GGVAV+++GGA+E EV EKKDR+ DALNAT+AAVEEGIV GGGV            +  N +   G+ I++ AL+ P+  I             KL++  + + G+DA    YVDM+K+GI+DP KV+RTAL DA S+++L+ T EA+V ++P++
Sbjct:  290 QDIAVLTAGQMISEDIGIKLENVTLDMLGRARRVLIEKDTTTIIDGSGDKASIQACISQIKAQIEETTSDYDKEKLQERLAKLTGGVAVIRVGGATELEVKEKKDRIDDALNATRAAVEEGIVAGGGVALLRAKSALASLTGENPEITAGIAIVRKALEAPIRQIADNAGVEGSIVIGKLVDSSDQNQGFDAQTETYVDMIKAGIVDPAKVVRTALRDAGSIAALLITAEAMVADIPEK 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.769e-62
Identity = 124/244 (50.82%), Postives = 166/244 (68.03%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG++I+E+LG+ LE V L  LG  +++ I KD+T I+DG GD  +I+ R  QIR+ IE +TSDYD+EKLQERLAKL+GGVA++++GG++E EV E+KDRV DALNAT+AAVEEGIVPGGG                N DQ+IG  I++ AL+ P+  I             K+LE    + G+DA  GE+ D+V +GIIDP KV+RTAL DAASV SL+ TTE +V E  +    AP
Sbjct:  290 EDIAILTGGEVISEDLGIKLESVTLSQLGQARRIVIDKDNTTIVDGEGDADAIKGRVGQIRAQIEETTSDYDREKLQERLAKLAGGVAIIRVGGSTEIEVKERKDRVDDALNATRAAVEEGIVPGGGTALARAAEVVARLQFHNDDQRIGGDIVRKALQAPLRQIAENAGEDGAVVAGKVLENGAYNFGFDAQIGEFKDLVAAGIIDPTKVVRTALQDAASVGSLLITTEVLVTEKAEPKPAAP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH604_BURXL (60 kDa chaperonin 4 OS=Burkholderia xenovorans (strain LB400) GN=groL4 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.310e-62
Identity = 125/243 (51.44%), Postives = 167/243 (68.72%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG +I EE G+ LEK  L  LG  K++ + K++T ++DGAGD K+IE R +QIR+ IE +TSDYD+EKLQER+AKL+GGVAV+K+GGA+E EV EKKDRV DAL+AT+AAVEEGIVPGGGV              AN DQ  G++I+  AL+ P+  I             K + Q   + GY+A  GEY D+V+SG++DP KV RTAL +A+SV+ L+ TT+A V E PK+   A
Sbjct:  290 EDIAILTGGQVIAEETGLSLEKATLAELGQAKRIEVGKENTTVIDGAGDSKNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGGATEIEVKEKKDRVDDALHATRAAVEEGIVPGGGVALIRVKQAISGLKGANADQDAGIKIVLRALEEPLRQIVTNAGEEASVVVAK-VAQGTGNFGYNAQTGEYGDLVQSGVLDPTKVTRTALQNASSVAGLLLTTDATVHEAPKDTPAA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_BURCH (60 kDa chaperonin 2 OS=Burkholderia cenocepacia (strain HI2424) GN=groL2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.310e-62
Identity = 126/243 (51.85%), Postives = 166/243 (68.31%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG +I EE G+ LEK  L  LG  K++ + K++T ++DGAGD K+IE R +QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+GGA+E EV EKKDRV DAL+AT+AAVEEGIVPGGGV              AN DQ  G++I+  AL+ P+  I             K+ E    + GY+A  GEY D+V+SG++DP KV RTAL +AASV+ L+ TT+A V E PK+   A
Sbjct:  290 EDIAILTGGQVIAEETGLTLEKTTLAELGQAKRIEVGKENTTVIDGAGDAKNIEARVKQIRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGGATEIEVKEKKDRVDDALHATRAAVEEGIVPGGGVALIRVRQAIRELKGANADQDAGIKIVLRALEEPLRQIVTNAGEEASVVVAKVAE-GTGNFGYNAQTGEYGDLVESGVLDPTKVTRTALQNAASVAGLLLTTDATVYEAPKDAAPA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_NOVAD (60 kDa chaperonin OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=groL PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.940e-62
Identity = 125/243 (51.44%), Postives = 165/243 (67.90%), Query Frame = 2
Query:    5 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            D+A LT G++I+E+LG+ LE V L MLG  KKVTI KD+T I+DGAG  + I+ R EQIR+ IE +TSDYD+EKLQERLAKL+GGVAV+K+GGA+E EV E+KDRV DAL+AT+AAVEEGIVPGGG               AN DQ  G+ I++ A++ P+  I              LL +++ + G++AA   Y ++  +G+IDP KV+RTAL DAASVS L+ TTEA + E P +    P
Sbjct:  291 DIATLTAGEMISEDLGIKLESVTLAMLGQAKKVTIDKDNTTIVDGAGSAEEIKARVEQIRAQIEVTTSDYDREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALLYATKALEGLKGANDDQTKGIDIVRRAIQAPIRQIAANAGHDGAVVSGNLLRENDENQGFNAATDTYENLKAAGVIDPTKVVRTALQDAASVSGLLITTEAAISEKPDDKPAMP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BARBK (60 kDa chaperonin OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=groL PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.940e-62
Identity = 124/244 (50.82%), Postives = 168/244 (68.85%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+AVLT G +I+E++G+ LE V L+MLG  KKV +SK+ T I+DGAG K  I  R  QI++ IE +TSDYD+EKLQERLAKL+GGVAV+++GG++E EV EKKDRV DALNAT+AAVEEGIVPGGG                N DQ+ G+ II+ AL+ P   I             K+LE  +   GY+ A  ++ D++  GI+DP+KV+R+AL +AAS++SL+ TTEA+V E+PK+   AP
Sbjct:  290 EDIAVLTSGQVISEDVGIKLENVTLEMLGRAKKVHVSKETTTIVDGAGQKSEINARVSQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAVEEGIVPGGGTALLRAAKALSIKG-KNPDQEAGIGIIRRALQAPARQIAHNAGEEAAVIVGKVLENCSDTFGYNTATAQFGDLISFGIVDPVKVVRSALQNAASIASLLITTEAMVAEVPKKEAAAP 532          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_RHIL31.769e-6250.2160 kDa chaperonin OS=Rhizobium leguminosarum bv. v... [more]
CH60_METSS1.769e-6251.0360 kDa chaperonin OS=Methylovorus sp. (strain SS1 ... [more]
CH60_GRAFK1.769e-6252.3060 kDa chaperonin OS=Gramella forsetii (strain KT0... [more]
CH60_BARQU1.769e-6250.8260 kDa chaperonin OS=Bartonella quintana GN=groL P... [more]
CH604_SINMW1.769e-6250.6360 kDa chaperonin 4 OS=Sinorhizobium medicae (stra... [more]
CH602_GLUDA1.769e-6250.8260 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
CH604_BURXL2.310e-6251.4460 kDa chaperonin 4 OS=Burkholderia xenovorans (st... [more]
CH602_BURCH2.310e-6251.8560 kDa chaperonin 2 OS=Burkholderia cenocepacia (s... [more]
CH60_NOVAD3.940e-6251.4460 kDa chaperonin OS=Novosphingobium aromaticivora... [more]
CH60_BARBK3.940e-6250.8260 kDa chaperonin OS=Bartonella bacilliformis (str... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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