DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ACIB5 (60 kDa chaperonin OS=Acinetobacter baumannii (strain AB0057) GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.554e-61
Identity = 123/244 (50.41%), Postives = 168/244 (68.85%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTG  +I+EE+GM LE+  L  LGT  K+T+SK++TVI+DGAGD  +I ER +QIR+ IE STS+YD+EKLQER+AKL+GGVAV+KIG A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV              AN DQ  G+ I++ A++ P+  I               ++    + GY+AA GEY DM++ GI+DP KV R+AL  AASV+ LM TTE ++ ++P++   AP
Sbjct:  290 QDIAILTGATVISEEVGMSLEQATLQDLGTAHKITVSKENTVIVDGAGDAAAIAERVQQIRAQIEESTSEYDREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGVVAGGGVALVRAVNALEGLKGANEDQTAGINILRRAIEAPLRQI-VANAGDEPSVVINAVKNGEGNFGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ACIB3 (60 kDa chaperonin OS=Acinetobacter baumannii (strain AB307-0294) GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.554e-61
Identity = 123/244 (50.41%), Postives = 168/244 (68.85%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTG  +I+EE+GM LE+  L  LGT  K+T+SK++TVI+DGAGD  +I ER +QIR+ IE STS+YD+EKLQER+AKL+GGVAV+KIG A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV              AN DQ  G+ I++ A++ P+  I               ++    + GY+AA GEY DM++ GI+DP KV R+AL  AASV+ LM TTE ++ ++P++   AP
Sbjct:  290 QDIAILTGATVISEEVGMSLEQATLQDLGTAHKITVSKENTVIVDGAGDAAAIAERVQQIRAQIEESTSEYDREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGVVAGGGVALVRAVNALEGLKGANEDQTAGINILRRAIEAPLRQI-VANAGDEPSVVINAVKNGEGNFGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ACIAD (60 kDa chaperonin OS=Acinetobacter sp. (strain ADP1) GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.554e-61
Identity = 123/244 (50.41%), Postives = 170/244 (69.67%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTG  +I+EE+GM LE+ +L  LGT  K+T+SK++TVI+DGAGD  +I ER +QIR+ IE STS+YDKEKLQER+AKL+GGVAV+KIG A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV            + AN DQ +G+ I++ A++ P+  I               ++    + GY+AA G Y DM++ GI+DP KV R+AL  AASV+ LM TTEA++ ++P++    P
Sbjct:  290 QDIAILTGATVISEEVGMSLEQASLQDLGTAHKITVSKENTVIVDGAGDANAIAERVQQIRAQIEESTSEYDKEKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGVVAGGGVALVRAVNSLDGLTGANDDQTVGINILRRAIEAPLRQI-VSNAGDEPSVVINAVKAGEGNYGYNAATGVYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTEAMITDIPEDKPAMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH603_BURCH (60 kDa chaperonin 3 OS=Burkholderia cenocepacia (strain HI2424) GN=groL3 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.336e-61
Identity = 123/239 (51.46%), Postives = 164/239 (68.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +DLA+LTG  +I+EE G  L+K  L+ LG+ K+V + KDDT+I+DGAGD   IE R + IR  I+ +TSDYD+EKLQER+AKL+GGVAV+K+G  +E E+ EKKDRV DAL+AT+AAVEEGIVPGGGV              AN DQ  G++I+  AL+ P+  I             K+LE    + GY+AA GEY D+V +G++DP KV RTAL +AAS++SL+ TT+A V + PKE
Sbjct:  290 EDLAILTGATVISEETGKQLDKATLEDLGSAKRVEVRKDDTIIIDGAGDAARIEARVKSIRVQIDEATSDYDREKLQERVAKLAGGVAVIKVGAVTEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARAALSDIRGANADQDAGIRIVLRALEAPLRVIAANAGDEPSVVISKVLE-GKGNFGYNAATGEYGDLVDAGVVDPTKVTRTALQNAASIASLVLTTDATVAQAPKE 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_BURCA (60 kDa chaperonin 2 OS=Burkholderia cenocepacia (strain AU 1054) GN=groL2 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.336e-61
Identity = 123/239 (51.46%), Postives = 164/239 (68.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +DLA+LTG  +I+EE G  L+K  L+ LG+ K+V + KDDT+I+DGAGD   IE R + IR  I+ +TSDYD+EKLQER+AKL+GGVAV+K+G  +E E+ EKKDRV DAL+AT+AAVEEGIVPGGGV              AN DQ  G++I+  AL+ P+  I             K+LE    + GY+AA GEY D+V +G++DP KV RTAL +AAS++SL+ TT+A V + PKE
Sbjct:  290 EDLAILTGATVISEETGKQLDKATLEDLGSAKRVEVRKDDTIIIDGAGDAARIEARVKSIRVQIDEATSDYDREKLQERVAKLAGGVAVIKVGAVTEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARAALSDIRGANADQDAGIRIVLRALEAPLRVIAANAGDEPSVVISKVLE-GKGNFGYNAATGEYGDLVDAGVVDPTKVTRTALQNAASIASLVLTTDATVAQAPKE 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSYA2 (60 kDa chaperonin OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=groL PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 4.357e-61
Identity = 121/238 (50.84%), Postives = 164/238 (68.91%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            +D+A LTGG +I+EE+G+ LE   L+ LGT KKVT+ K++TVI+DGAG    IE R E IR  +E STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+VPGGGV               N DQ  G+ I++ A++ P+  I             + ++  + + GY+AA GEY DM++ GI+DP KV R+AL +AASV+ LM TTE ++ +LP+
Sbjct:  289 EDIATLTGGTVISEEIGLSLETATLEQLGTAKKVTVGKENTVIVDGAGHSADIENRVESIRRQVEESTSDYDKEKLQERMAKLAGGVAVIKVGAATETEMKEKKDRVDDALHATRAAVEEGVVPGGGVALVRAMNALSELRGDNDDQNAGINILRRAMEAPLRQIVTNSGEEASVVVNE-VKSGSGNYGYNAASGEYGDMLEMGILDPAKVARSALENAASVAGLMLTTEVMITDLPQ 525          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSEHT (60 kDa chaperonin OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=groL PE=3 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 4.357e-61
Identity = 122/239 (51.05%), Postives = 166/239 (69.46%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+AVLTGG +I+EE+G++LEK  ++ LGT K+V I+KDDT I+DGAG++  I  R  QI++ IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DALNAT+AAVEEG+VPGGGV               N DQ  G+++   A++ P+  I               ++  + + GY+AA GEY DM++ GI+DP KV R+AL  A S++ LM TTEA+V E+PK+
Sbjct:  291 QDIAVLTGGTVISEEIGLELEKATVEDLGTAKRVIITKDDTTIIDGAGEEAGINGRVSQIKAQIEEATSDYDKEKLQERMAKLAGGVAVIKVGAATEMEMKEKKDRVEDALNATRAAVEEGVVPGGGVALVRAASKLVDLVGDNEDQNHGIKVALRAMEAPLRQI-VTNAGDEASVVINAVKAGSGNFGYNAATGEYNDMIEMGILDPTKVTRSALQFAGSIAGLMITTEAMVAEIPKD 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_NEIMF (60 kDa chaperonin OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=groL PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 4.357e-61
Identity = 121/244 (49.59%), Postives = 164/244 (67.21%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G+ LEK  LD LG  K++ I K++T I+DG GD   IE R  +IR  IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV             T N DQ  GVQI+  A+++P+  I             K+LE    + GY+A  GEY DM++ G++DP KV R+AL  AAS++ LM TT+ ++ E+P++    P
Sbjct:  290 QDIAILTGGTVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLE-GKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_NEIMA (60 kDa chaperonin OS=Neisseria meningitidis serogroup A GN=groL PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 4.357e-61
Identity = 121/244 (49.59%), Postives = 164/244 (67.21%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G+ LEK  LD LG  K++ I K++T I+DG GD   IE R  +IR  IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV             T N DQ  GVQI+  A+++P+  I             K+LE    + GY+A  GEY DM++ G++DP KV R+AL  AAS++ LM TT+ ++ E+P++    P
Sbjct:  290 QDIAILTGGTVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLE-GKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CUPTR (60 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groL PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 4.357e-61
Identity = 123/239 (51.46%), Postives = 165/239 (69.04%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +I EE+G+ LEK  L+ LG  K++ I K++T+I+DGAGD   IE R +QIR+ IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV               N DQ  G++I+  A++ P+  I             K++E    + GY+AA GEY D+V+ G++DP KV RTAL +AASV+SLM TT+  V E PKE
Sbjct:  290 EDIAILTGGTVIAEEVGLTLEKATLNDLGQAKRIEIGKENTIIIDGAGDAAGIEGRVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRARAAISALQGDNADQNAGIKIVLRAMEEPLRQIVLNAGEEASVVVAKVIE-GKGNYGYNAASGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAETPKE 527          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ACIB52.554e-6150.4160 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIB32.554e-6150.4160 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIAD2.554e-6150.4160 kDa chaperonin OS=Acinetobacter sp. (strain ADP... [more]
CH603_BURCH3.336e-6151.4660 kDa chaperonin 3 OS=Burkholderia cenocepacia (s... [more]
CH602_BURCA3.336e-6151.4660 kDa chaperonin 2 OS=Burkholderia cenocepacia (s... [more]
CH60_PSYA24.357e-6150.8460 kDa chaperonin OS=Psychrobacter arcticus (strai... [more]
CH60_PSEHT4.357e-6151.0560 kDa chaperonin OS=Pseudoalteromonas haloplankti... [more]
CH60_NEIMF4.357e-6149.5960 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIMA4.357e-6149.5960 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_CUPTR4.357e-6151.4660 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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