DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_RALME (60 kDa chaperonin OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=groL PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 5.690e-61
Identity = 123/239 (51.46%), Postives = 165/239 (69.04%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +I EE+G+ LEK  L  LG  K++ I K++T+I+DGAGD  +IE R +QIR+ IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV               N DQ  G++I+  A++ P+  I             K++E    + GY+AA GEY D+V+ G++DP KV RTAL +AASV+SLM TT+  V E PKE
Sbjct:  290 EDIAILTGGTVIAEEIGLTLEKATLQDLGQAKRIEIGKENTIIIDGAGDASAIEGRVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRARAAIAGLHGENPDQNAGIKIVLRAMEEPLRQIVLNAGEEASVVVAKVIE-GKGNYGYNAASGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAESPKE 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_NEIMB (60 kDa chaperonin OS=Neisseria meningitidis serogroup B GN=groL PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 5.690e-61
Identity = 121/244 (49.59%), Postives = 164/244 (67.21%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G+ LEK  LD LG  K++ I K++T I+DG GD   IE R  +IR  IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV             T N DQ  GVQI+  A+++P+  I             K+LE    + GY+A  GEY DM++ G++DP KV R+AL  AAS++ LM TT+ ++ E+P++    P
Sbjct:  290 QDIAILTGGVVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLE-GKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAVP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_NEIM0 (60 kDa chaperonin OS=Neisseria meningitidis serogroup C (strain 053442) GN=groL PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 5.690e-61
Identity = 121/244 (49.59%), Postives = 164/244 (67.21%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G+ LEK  LD LG  K++ I K++T I+DG GD   IE R  +IR  IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV             T N DQ  GVQI+  A+++P+  I             K+LE    + GY+A  GEY DM++ G++DP KV R+AL  AAS++ LM TT+ ++ E+P++    P
Sbjct:  290 QDIAILTGGVVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLE-GKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAVP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CHRVI (60 kDa chaperonin OS=Chromatium vinosum GN=groL PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 5.690e-61
Identity = 122/243 (50.21%), Postives = 166/243 (68.31%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A+LTG  +I+EE+G+ LEK  L  LGT K+V + KD+T I+DG+G +  I+ RCEQIR+ +E ++SDYD+EKLQERLAKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV              AN DQ +G+ I + A++ P+  I             K+ E    + GY+AA GEY DMV+ GI+DP KV R+AL ++ SV+ LM TTEA++ + PK+   A
Sbjct:  290 QDIAILTGATVISEEVGLSLEKATLTDLGTAKRVQVGKDETTIIDGSGSEIDIKARCEQIRAQVEETSSDYDREKLQERLAKLAGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVEEGIVPGGGVALVRAIAAVKDLKGANHDQDVGIAIARRAMEEPLRQIVANAGEEPSVILHKVAE-GTGNFGYNAANGEYGDMVEMGILDPTKVTRSALQNSCSVAGLMITTEAMIADEPKDDAPA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH603_SYNAS (60 kDa chaperonin 3 OS=Syntrophus aciditrophicus (strain SB) GN=groL3 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 5.690e-61
Identity = 129/244 (52.87%), Postives = 172/244 (70.49%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+AVLTGG+LI+E++G+ LE V L  LGTCKKVT+ KD+T I+DGAG++  IE R +QIR+ IE + SDYD+EKLQERLAK+ GGVAV+++G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV               + +Q+ G+ I++ AL+ P+  I             K+ E + T  G+DA   +YVDM+K+GIIDP KV R AL +AASV+SL+ TTEA++ E PK+ KE P
Sbjct:  290 QDIAVLTGGNLISEDVGIKLENVTLQDLGTCKKVTVDKDNTTIVDGAGNRADIEGRVKQIRAEIEETKSDYDREKLQERLAKIVGGVAVIRVGAATEIEMKEKKARVEDALHATRAAVEEGIVPGGGVAFIRSIGALADAKLPDEEQQ-GLNIVRRALEEPLRQIAANAGCEGSIVVEKVKESNGTH-GFDAETEQYVDMLKAGIIDPTKVARFALQNAASVASLLLTTEAMIAEKPKK-KEPP 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: HSP60_CANAL (Heat shock protein 60, mitochondrial OS=Candida albicans GN=HSP60 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 7.431e-61
Identity = 121/240 (50.42%), Postives = 163/240 (67.92%), Query Frame = 2
Query:    5 DLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIEN-STSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG--VXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            D+A+L+GG + TEEL +  E   ++ LG+   VTI+K+DTV+L+G G K ++E RCEQIRS I +  T++Y+KEKLQERLAKLSGGVAV+K+GGASE EVGEKKDR  DALNAT+AAVEEGI+PGGG  +               NFDQK+GV  I+ A+  P   I             K+ ++   + GYD+ KGE+ DM+ +GIIDP KV++  LVDA+ V+SL+ TTE  +V+ P+
Sbjct:  307 DIAILSGGTVFTEELDIKPENATIEQLGSAGAVTITKEDTVLLNGEGSKDNLEARCEQIRSVIADVHTTEYEKEKLQERLAKLSGGVAVIKVGGASEVEVGEKKDRYEDALNATRAAVEEGILPGGGTALIKATKILDEVKEKAVNFDQKLGVDTIRAAITKPAKRIIENAGEEGAVIVGKIYDEPEFNKGYDSQKGEFTDMIAAGIIDPFKVVKNGLVDASGVASLLATTECAIVDAPQ 546          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSYCK (60 kDa chaperonin OS=Psychrobacter cryohalolentis (strain K5) GN=groL PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 7.431e-61
Identity = 120/238 (50.42%), Postives = 164/238 (68.91%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            +D+A LTGG +I+EE+G+ LE   L+ LGT KKVT+ K++TVI+DGAG+   IE R E I+  +E STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+VPGGGV               N DQ  G+ I++ A++ P+  I             + ++    + GY+AA GEY DM++ GI+DP KV R+AL +AASV+ LM TTE ++ +LP+
Sbjct:  289 EDIATLTGGTVISEEIGLSLETATLEQLGTAKKVTVGKENTVIVDGAGNSADIENRVESIKRQVEESTSDYDKEKLQERMAKLAGGVAVIKVGAATETEMKEKKDRVDDALHATRAAVEEGVVPGGGVALVRAMNALSELRGDNDDQNAGINILRRAMEAPLRQIVTNSGEEASVVVNE-VKSGTGNYGYNAASGEYGDMLEMGILDPAKVARSALENAASVAGLMLTTEVMITDLPQ 525          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_NITMU (60 kDa chaperonin OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=groL PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 7.431e-61
Identity = 123/239 (51.46%), Postives = 164/239 (68.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +I EE+G+ LEK  L  LG  K+V + K++T I+DGAGD ++IE R +QIR+ IE +TSDYDKEKLQER+AKL+GGVA++K+G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV               N DQ  G++I+  AL+ P+  I             K+LE    + GY+AA  EY DMV+ G++DP KV R AL  AAS++ LM TT+A+V E+PKE
Sbjct:  290 EDIAILTGGTVIAEEVGLSLEKATLAELGQAKRVEVGKEETTIIDGAGDTQNIEGRVKQIRAQIEEATSDYDKEKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRTRSAVSNLKGDNHDQDAGIKIVLRALEEPLRQIVANCGDEPSVVINKVLE-GTENFGYNAASSEYGDMVQMGVLDPTKVTRYALQHAASIAGLMLTTDALVAEVPKE 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_NEIG2 (60 kDa chaperonin OS=Neisseria gonorrhoeae (strain NCCP11945) GN=groL PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 7.431e-61
Identity = 121/244 (49.59%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G+ LEK  LD LG  K++ I K++T ++DG GD   IE R  +IR  IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV             T N DQ  GVQI+  A+++P+  I             K+LE    + GY+A  GEY DM+  G++DP KV R+AL  AAS++ LM TT+ ++ E+P+E    P
Sbjct:  290 QDIAILTGGVVISEEVGLSLEKATLDDLGQAKRIEIGKENTTVIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLE-GKGNYGYNAGSGEYGDMIGMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEEKPAVP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_NEIG1 (60 kDa chaperonin OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=groL PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 7.431e-61
Identity = 121/244 (49.59%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G+ LEK  LD LG  K++ I K++T ++DG GD   IE R  +IR  IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV             T N DQ  GVQI+  A+++P+  I             K+LE    + GY+A  GEY DM+  G++DP KV R+AL  AAS++ LM TT+ ++ E+P+E    P
Sbjct:  290 QDIAILTGGVVISEEVGLSLEKATLDDLGQAKRIEIGKENTTVIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLE-GKGNYGYNAGSGEYGDMIGMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEEKPAVP 532          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_RALME5.690e-6151.4660 kDa chaperonin OS=Ralstonia metallidurans (stra... [more]
CH60_NEIMB5.690e-6149.5960 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIM05.690e-6149.5960 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_CHRVI5.690e-6150.2160 kDa chaperonin OS=Chromatium vinosum GN=groL PE... [more]
CH603_SYNAS5.690e-6152.8760 kDa chaperonin 3 OS=Syntrophus aciditrophicus (... [more]
HSP60_CANAL7.431e-6150.42Heat shock protein 60, mitochondrial OS=Candida al... [more]
CH60_PSYCK7.431e-6150.4260 kDa chaperonin OS=Psychrobacter cryohalolentis ... [more]
CH60_NITMU7.431e-6151.4660 kDa chaperonin OS=Nitrosospira multiformis (str... [more]
CH60_NEIG27.431e-6149.5960 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]
CH60_NEIG17.431e-6149.5960 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
back to top