DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_BURS3 (60 kDa chaperonin 1 OS=Burkholderia sp. (strain 383) GN=groL1 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 7.431e-61
Identity = 122/239 (51.05%), Postives = 164/239 (68.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +I EE G+ LEK  L  LG  K++ + K++T ++DGAGD K+IE R +QIR  I+ +TSDYD+EKLQER+AKL+GGVAV+K+GGA+E EV EKKDRV DAL+AT+AAVEEGIVPGGGV               N DQ  G++I+  AL+ P+  I             K+ E  + + GY+A  G Y D+V+SG++DP KV RTAL +AASV+ L+ TT+A V E PK+
Sbjct:  290 EDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTVIDGAGDAKNIEARVKQIRVQIDEATSDYDREKLQERVAKLAGGVAVIKVGGATEIEVKEKKDRVDDALHATRAAVEEGIVPGGGVALIRVRQAIRELQGVNADQNAGIKIVLRALEEPLRQIVTNAGEEASVVVAKVAE-GSGNFGYNAQTGVYGDLVESGVLDPTKVTRTALQNAASVAGLLLTTDATVFEAPKD 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CHLTR (60 kDa chaperonin OS=Chlamydia trachomatis GN=groL PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 9.706e-61
Identity = 123/245 (50.20%), Postives = 168/245 (68.57%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG--VXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG LI+EELGM LE  NL MLG  KKV +SK+DT I++G G+K+++E RCE I+  IE+S+SDYDKEKLQERLAKLSGGVAV+++G A+E E+ EKKDRV DA +AT AAVEEGI+PGGG  +               N D++IG +I+  AL  P+  I             +++ +   + GYDA +  Y DM+++GI+DP KV R+AL  AASV+ L+ TTEA++ E+P+E   A
Sbjct:  290 EDIAILTGGQLISEELGMKLENANLAMLGKAKKVIVSKEDTTIVEGMGEKEALEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANE-GYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEALIAEIPEEKPAA 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CHLTB (60 kDa chaperonin OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=groL PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 9.706e-61
Identity = 123/245 (50.20%), Postives = 168/245 (68.57%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG--VXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG LI+EELGM LE  NL MLG  KKV +SK+DT I++G G+K+++E RCE I+  IE+S+SDYDKEKLQERLAKLSGGVAV+++G A+E E+ EKKDRV DA +AT AAVEEGI+PGGG  +               N D++IG +I+  AL  P+  I             +++ +   + GYDA +  Y DM+++GI+DP KV R+AL  AASV+ L+ TTEA++ E+P+E   A
Sbjct:  290 EDIAILTGGQLISEELGMKLENANLAMLGKAKKVIVSKEDTTIVEGMGEKEALEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANE-GYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEALIAEIPEEKPAA 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CHLTA (60 kDa chaperonin OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=groL PE=2 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 9.706e-61
Identity = 123/245 (50.20%), Postives = 168/245 (68.57%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG--VXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG LI+EELGM LE  NL MLG  KKV +SK+DT I++G G+K+++E RCE I+  IE+S+SDYDKEKLQERLAKLSGGVAV+++G A+E E+ EKKDRV DA +AT AAVEEGI+PGGG  +               N D++IG +I+  AL  P+  I             +++ +   + GYDA +  Y DM+++GI+DP KV R+AL  AASV+ L+ TTEA++ E+P+E   A
Sbjct:  290 EDIAILTGGQLISEELGMKLENANLAMLGKAKKVIVSKEDTTIVEGMGEKEALEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANE-GYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEALIAEIPEEKPAA 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CHLT2 (60 kDa chaperonin OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=groL PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 9.706e-61
Identity = 123/245 (50.20%), Postives = 168/245 (68.57%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG--VXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG LI+EELGM LE  NL MLG  KKV +SK+DT I++G G+K+++E RCE I+  IE+S+SDYDKEKLQERLAKLSGGVAV+++G A+E E+ EKKDRV DA +AT AAVEEGI+PGGG  +               N D++IG +I+  AL  P+  I             +++ +   + GYDA +  Y DM+++GI+DP KV R+AL  AASV+ L+ TTEA++ E+P+E   A
Sbjct:  290 EDIAILTGGQLISEELGMKLENANLAMLGKAKKVIVSKEDTTIVEGMGEKEALEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANE-GYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEALIAEIPEEKPAA 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_BURVG (60 kDa chaperonin 2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=groL2 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 9.706e-61
Identity = 120/241 (49.79%), Postives = 166/241 (68.88%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            +D+A+LTG  +I+EE G  L+K  LD LG+ K+V + KDDT+I+DGAGD   I+ R + IR  I+ +TSDYD+EKLQER+AKL+GGVAV+K+G  +E E+ EKKDRV DAL+AT+AAVEEGIVPGGGV              AN DQ  G++I+  AL+ P+  I             K+LE  + + GY+AA GEY D+V++G++DP KV RTAL +AAS++ L+ TT+A V + PK+ +
Sbjct:  290 EDIAILTGATVISEETGKQLDKATLDDLGSAKRVEVRKDDTIIIDGAGDAARIDARVKSIRVQIDEATSDYDREKLQERVAKLAGGVAVIKVGAVTEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARAALTDLKGANGDQDAGIRIVLRALEAPLRVIASNAGDEPSVVIAKVLE-GSGNFGYNAATGEYGDLVEAGVVDPTKVTRTALQNAASIAGLVLTTDATVADAPKDER 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_CHLCV (60 kDa chaperonin 1 OS=Chlamydophila caviae GN=groL1 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 9.706e-61
Identity = 123/241 (51.04%), Postives = 165/241 (68.46%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG--VXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG LI+EELGM LE   L MLG  KKV +SK+DT I++G G K+ IE RCE I+  IE+STSDYDKEKLQERLAKLSGGVAV+++G A+E E+ EKKDRV DA +AT AAVEEGI+PGGG  +               N D++IG +I+  AL  P+  I             ++L + +++ GYDA +  Y DM+++GI+DP KV R AL  AASV+ L+ TTEA++ ++P+E
Sbjct:  290 EDIAILTGGQLISEELGMKLENTTLAMLGKAKKVIVSKEDTTIVEGLGSKEDIESRCESIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATLAAVEEGILPGGGTALVRCIPTLEAFIPILTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLSRSSSE-GYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEALIADIPEE 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CHLMU (60 kDa chaperonin OS=Chlamydia muridarum GN=groL PE=2 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 1.268e-60
Identity = 122/245 (49.80%), Postives = 168/245 (68.57%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG--VXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG LI+EELGM LE  +L MLG  KKV +SK+DT I++G G+K++++ RCE I+  IE+STSDYDKEKLQERLAKLSGGVAV+++G A+E E+ EKKDRV DA +AT AAVEEGI+PGGG  +               N D++IG +I+  AL  P+  I             +++ +   + GYDA +  Y DM+++GI+DP KV R+AL  AASV+ L+ TTEA++ E+P+E   A
Sbjct:  290 EDIAILTGGQLISEELGMKLENASLAMLGKAKKVIVSKEDTTIVEGMGEKEALDARCESIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDERIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSANE-GYDALRDAYTDMIEAGILDPAKVTRSALESAASVAGLLLTTEALIAEIPEEKPAA 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_TRYBB (Chaperonin HSP60, mitochondrial OS=Trypanosoma brucei brucei GN=HSP60 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 1.656e-60
Identity = 125/249 (50.20%), Postives = 167/249 (67.07%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEE---LGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGG---VXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A+ +G  ++ EE   + +D EK    +LG+ KK TI+KDDTV+L+G GD   ++ER + +R  IE  TSDY++EKLQERLAKLSGGVAV+++GGASE EV EKKDR+TDAL +T+AAV+EGIVPGGG   +             +   DQ+ GVQII+NA++ P H I             K+LE  +  +GYDA    YV+M ++GIIDP +V+R AL DAASV+SLM T EA VV+LPK+   A
Sbjct:  297 QDIAIFSGACVVGEEGSGVELDAEKFEASILGSVKKATITKDDTVLLNGGGDVAMMKERVDLVRGLIERETSDYNREKLQERLAKLSGGVAVIRVGGASEVEVNEKKDRITDALCSTRAAVQEGIVPGGGPALLRASKALDGLLQDQSLTADQRTGVQIIRNAVRLPAHRIVANAGREGAVVVEKVLENTDAAVGYDAQLDRYVNMFEAGIIDPARVVRVALTDAASVASLMMTAEAAVVDLPKDDAPA 545          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BURTH (60 kDa chaperonin OS=Burkholderia thailandensis GN=groL PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.656e-60
Identity = 122/244 (50.00%), Postives = 165/244 (67.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I EE G+ LEK  L  LG  K++ + K++T I+DGAG+  +IE R +QIR+ IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV            +  N DQ  G++I+  A++ P+  I               +     + GY+AA GEYVDMV++G++DP KV RTAL +AASV+ L+ TT+A V ELPKE    P
Sbjct:  290 EDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIAALTGVNADQNAGIKIVLRAMEEPLRQI-VTNGGEEASVVVAAVAAGKGNYGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMP 532          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_BURS37.431e-6151.0560 kDa chaperonin 1 OS=Burkholderia sp. (strain 38... [more]
CH60_CHLTR9.706e-6150.2060 kDa chaperonin OS=Chlamydia trachomatis GN=groL... [more]
CH60_CHLTB9.706e-6150.2060 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH60_CHLTA9.706e-6150.2060 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH60_CHLT29.706e-6150.2060 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH602_BURVG9.706e-6149.7960 kDa chaperonin 2 OS=Burkholderia vietnamiensis ... [more]
CH601_CHLCV9.706e-6151.0460 kDa chaperonin 1 OS=Chlamydophila caviae GN=gro... [more]
CH60_CHLMU1.268e-6049.8060 kDa chaperonin OS=Chlamydia muridarum GN=groL P... [more]
CH60_TRYBB1.656e-6050.20Chaperonin HSP60, mitochondrial OS=Trypanosoma bru... [more]
CH60_BURTH1.656e-6050.0060 kDa chaperonin OS=Burkholderia thailandensis GN... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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