DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.452e-58
Identity = 128/243 (52.67%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG++I+EELG  LE  +L  LG   +V I KD+T I++GAGDK SIE R  QI++ I  +TSDYDKEKLQERLAKLSGGVAV+K+G A+E E+ EKKDRV DALNATKAAVEEGIV GGG              +   D+ IG +I++ AL  P+  I              +   D  + G++AA GEYVDM ++GIIDP+KV R AL +A SV+SL+ TTEA V E+ KE K A
Sbjct:  289 EDIAILTGGEVISEELGRTLESASLQDLGQADRVVIDKDNTTIVNGAGDKDSIEARINQIKAQIAETTSDYDKEKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALNATKAAVEEGIVVGGGAALIKAGNRVNL--SLKGDELIGAEIVKRALFAPLRQIAENAGFDAGVVANSVSCADCPNYGFNAASGEYVDMFEAGIIDPVKVERIALQNAVSVASLLLTTEATVSEI-KEDKPA 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BUCAI (60 kDa chaperonin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=groL PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.452e-58
Identity = 122/243 (50.21%), Postives = 159/243 (65.43%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+++LTGG +I+EEL M+LEK  L+ LG  K+V ISKD T I+ G G+K SI+ R  QIR  I+ +TSDYDKEKL ERLAKLSGGVAVLK+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A++ P+  I               ++    + GY+AA  EY DM+  GI+DP KV R+AL  AASV+ LM TTE +V +LPKE K +
Sbjct:  290 QDISILTGGSVISEELAMELEKSTLEDLGQAKRVVISKDTTTIIGGVGEKHSIQSRISQIRQEIQEATSDYDKEKLNERLAKLSGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAGKIADLRGQNEDQNVGIRVALRAMEAPLRQIVSNSGEEPSVVTNN-VKDGKGNYGYNAATDEYGDMIDFGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKEDKSS 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BUCA5 (60 kDa chaperonin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=groL PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.452e-58
Identity = 122/243 (50.21%), Postives = 159/243 (65.43%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+++LTGG +I+EEL M+LEK  L+ LG  K+V ISKD T I+ G G+K SI+ R  QIR  I+ +TSDYDKEKL ERLAKLSGGVAVLK+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A++ P+  I               ++    + GY+AA  EY DM+  GI+DP KV R+AL  AASV+ LM TTE +V +LPKE K +
Sbjct:  290 QDISILTGGSVISEELAMELEKSTLEDLGQAKRVVISKDTTTIIGGVGEKHSIQSRISQIRQEIQEATSDYDKEKLNERLAKLSGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAGKIADLRGQNEDQNVGIRVALRAMEAPLRQIVSNSGEEPSVVTNN-VKDGKGNYGYNAATDEYGDMIDFGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKEDKSS 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_AMOA5 (60 kDa chaperonin OS=Amoebophilus asiaticus (strain 5a2) GN=groL PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.452e-58
Identity = 117/241 (48.55%), Postives = 161/241 (66.80%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            +D+A+LTGG +I+EE G  LE   LD LGT +K+ I K++T+I++G G K+ I+ R  QIRS IEN+TSDYDKEKLQERLAKLSGGVA+L IG A+E E+ EKKDRV DAL+AT+AAV+EG+V GGGV               N DQ  G+ I++ +L+ P+ TI             K+ E    D GY+A  G + ++ ++G+IDP KV R AL +AAS++SL+ TTE ++ +  +E K
Sbjct:  289 EDIAILTGGTVISEERGYKLENATLDYLGTAEKINIDKENTLIVNGGGKKEDIQARISQIRSQIENTTSDYDKEKLQERLAKLSGGVAILYIGAATEVEMKEKKDRVDDALHATRAAVQEGVVAGGGVALIRTIPALENIEVENEDQATGINIVRTSLEAPLRTIVSNAGGEGAVIVQKIREAQG-DFGYNARTGNFENLYEAGVIDPTKVTRLALENAASIASLLLTTECVIADEKEEDK 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SHEPC (60 kDa chaperonin OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=groL PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.508e-58
Identity = 120/238 (50.42%), Postives = 159/238 (66.81%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            QD+A+LTGG +I EE+G++LEK  L+ LGT K+V I+KD+T I+DG G++  IE R  QI+  IE STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N DQK GV I   A++ P+  I               ++  + + GY+A    Y DM++ GI+DP KV R AL  AAS++ LM TTEA+V E+P+
Sbjct:  290 QDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIAELEVLNEDQKHGVVIALRAMEAPLRQI-ATNAGEEASVVANTVKNGSGNFGYNAGNDTYGDMLEMGILDPTKVTRCALQFAASIAGLMITTEAMVAEIPQ 526          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PEDPA (60 kDa chaperonin OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=groL PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.508e-58
Identity = 120/239 (50.21%), Postives = 165/239 (69.04%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +IT++LG++L+ V ++ LG   KVT++KDDT I++GAG ++ I ER   I+  I  +TSD+DKEKLQERLAKLSGGVAV+++G A+E E+ EKK R+ DALNAT+AAVEEG VPGGG               A  D+  GV I++ AL+ PV  I             KL  Q    +GY+AA  E+VDMV++GI+DP KV R+AL +AASVS+L+ TTEA+V +LP++
Sbjct:  288 EDIAILTGGTVITDDLGLNLKDVTIEQLGQSNKVTVTKDDTTIVEGAGSQEQIAERVGIIKQQISETTSDFDKEKLQERLAKLSGGVAVIRVGAATETELKEKKYRIEDALNATRAAVEEGFVPGGGTALANVISDLEDVE-AEGDEATGVNIVRRALEEPVRQIAENAGEEGSVIVTKLKGQ-KPGVGYNAANDEWVDMVEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADLPED 524          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HAEPS (60 kDa chaperonin OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=groL PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.508e-58
Identity = 120/242 (49.59%), Postives = 165/242 (68.18%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  ++ LG  K+V ISKD+T I+DG GD+  I+ R  QIR  IE+STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGI+ GGGV                N +Q +G+++   A++ P+  I             + ++  N + GY+AA  +Y DM++ GI+DP KV R+AL  AAS++ LM TTE +V +LPKE K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATIEELGQAKRVVISKDNTTIIDGVGDEVQIKARVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIIAGGGVALVRAASKVADVVKGDNEEQNVGIRLALRAMEAPLRQI-VTNAGEEASVVARNVKDGNGNYGYNAATEQYGDMLEMGILDPTKVTRSALQFAASIAGLMITTECMVTDLPKEEK 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HAEDU (60 kDa chaperonin OS=Haemophilus ducreyi GN=groL PE=3 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 4.508e-58
Identity = 120/242 (49.59%), Postives = 165/242 (68.18%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE+STSDYDKEKLQER+AKL+GGVAV+K+G A+E  + EKKDRV DAL+AT+AAVEEGIVPGGGV             T  N +Q +G+++   A++ P+  I             + ++  + + GY+A   EY DM++ GI+DP KV R+AL  AAS++ LM TTE ++ +LPKE K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEELGQAKRVVITKDNTTIIDGIGDEAQIKARVVQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEKKDRVDDALHATRAAVEEGIVPGGGVALVRAANKVSATLTGDNEEQNVGIKLALRAMEAPLRQI-VENSGEDASVVARDVKDGSGNFGYNATTEEYGDMLEMGILDPTKVTRSALQFAASIAGLMITTECMITDLPKEDK 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ENTS8 (60 kDa chaperonin OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=groL PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.508e-58
Identity = 119/241 (49.38%), Postives = 162/241 (67.22%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LTGG +I+EE+GM+LEK  L+ LG  K+V I+KD T I+DG GD+ +I+ R  QIR  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV            +  N DQ +G+++   A++ P+  I              +   D  + GY+AA  EY +M+  GI+DP KV R+AL  A+SV+ LM TTE +V +LPKE K
Sbjct:  290 QDIAILTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGDESAIQGRVGQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAAKLTELTGQNEDQNVGIKVALRAMEAPLRQIVSNAGEEPSVVANNVKAGDG-NYGYNAATEEYGNMIDMGILDPTKVTRSALQYASSVAGLMITTECMVTDLPKEDK 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BUCRM (60 kDa chaperonin OS=Buchnera aphidicola subsp. Rhopalosiphum maidis GN=groL PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.508e-58
Identity = 122/241 (50.62%), Postives = 159/241 (65.98%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD++VLTGG +I+EEL MDLEK  L+ LG  K+V I+KD T I+ G G+K++I+ R  QIR  I+ +TSDYDKEKL ERLAKLSGGVAVLK+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A++ P+  I               ++    + GY+AA  EY DM+  GI+DP KV R+AL  AASV+ LM TTE +V +LPKE K
Sbjct:  290 QDISVLTGGSVISEELAMDLEKSTLEDLGQAKRVVINKDTTTIIGGVGEKQAIQSRISQIRQEIQEATSDYDKEKLNERLAKLSGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAGKISNLRGHNEDQNVGIRVALRAMEAPLRQIVSNSGEEPSVVTNN-VKDGKGNYGYNAATDEYGDMIDFGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKEDK 529          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CAMFF3.452e-5852.6760 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH60_BUCAI3.452e-5850.2160 kDa chaperonin OS=Buchnera aphidicola subsp. Ac... [more]
CH60_BUCA53.452e-5850.2160 kDa chaperonin OS=Buchnera aphidicola subsp. Ac... [more]
CH60_AMOA53.452e-5848.5560 kDa chaperonin OS=Amoebophilus asiaticus (strai... [more]
CH60_SHEPC4.508e-5850.4260 kDa chaperonin OS=Shewanella putrefaciens (stra... [more]
CH60_PEDPA4.508e-5850.2160 kDa chaperonin OS=Pediococcus pentosaceus (stra... [more]
CH60_HAEPS4.508e-5849.5960 kDa chaperonin OS=Haemophilus parasuis serovar ... [more]
CH60_HAEDU4.508e-5849.5960 kDa chaperonin OS=Haemophilus ducreyi GN=groL P... [more]
CH60_ENTS84.508e-5849.3860 kDa chaperonin OS=Enterobacter sakazakii (strai... [more]
CH60_BUCRM4.508e-5850.6260 kDa chaperonin OS=Buchnera aphidicola subsp. Rh... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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