DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_VIBHA (60 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.508e-58
Identity = 118/239 (49.37%), Postives = 166/239 (69.46%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I+EE+G++LEKV L+ LG  K+V I+K++T I+DG G++  I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV               N +Q +G+++   A++ P+  I              +   + +  GY+AA GEY DM++ GI+DP KV R+AL  AASV+ LM TTEA+V +LP++
Sbjct:  290 QDIAILTGGIVISEEVGLELEKVALEDLGQAKRVAITKENTTIIDGVGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKIVDLEGDNEEQNVGIRVALRAMEAPIRQITKNAGDEESVVANNVKAGEGS-YGYNAATGEYGDMLEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDLPQK 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_VIBHB (60 kDa chaperonin OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=groL PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.888e-58
Identity = 118/239 (49.37%), Postives = 166/239 (69.46%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I+EE+G++LEKV L+ LG  K+V I+K++T I+DG G++  I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV               N +Q +G+++   A++ P+  I              +   + +  GY+AA GEY DM++ GI+DP KV R+AL  AASV+ LM TTEA+V +LP++
Sbjct:  290 QDIAILTGGIVISEEVGLELEKVALEDLGQAKRVAITKENTTIIDGMGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKIVDLEGDNEEQNVGIRVALRAMEAPIRQITKNAGDEESVVANNVKAGEGS-YGYNAATGEYGDMLEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDLPQK 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_THEM4 (60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groL PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.888e-58
Identity = 116/245 (47.35%), Postives = 166/245 (67.76%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGV-XXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG + +EE+G++LE + L+ LG    V + KD+T+I+ G GD++ I++R  QI++ IE +TS+Y+KE LQER+AKL+GGVAV+K+G A+E E+ EKK R+ DAL+AT+AAVEEGIVPGGG+                + D+KIG +I+  AL  P++ I             K+LEQD+   G+DA KGEY DM + GIIDP KV R+AL +AAS++ ++ TTE +VVE P+     P
Sbjct:  288 QDIAILTGGIVASEEVGINLEDLTLNDLGRADVVRVKKDETIIVGGHGDQEEIKKRIAQIKAQIEQTTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKPVEKIVEELDGDEKIGAKIVYEALSAPINQIAKNAGYDGAIIIHKVLEQDDPAYGFDALKGEYCDMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEPKNNNP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SHESW (60 kDa chaperonin OS=Shewanella sp. (strain W3-18-1) GN=groL PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.888e-58
Identity = 120/238 (50.42%), Postives = 159/238 (66.81%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            QD+A+LTGG +I EE+G++LEK  L+ LGT K+V I+KD+T I+DG G++  IE R  QI+  IE STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N DQK GV I   A++ P+  I               ++  + + GY+A    Y DM++ GI+DP KV R AL  AAS++ LM TTEA+V E+P+
Sbjct:  290 QDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQAQIEARVSQIKQQIEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIAELEVLNEDQKHGVVIALRAMEAPLRQI-ATNAGEEASVVANTVKNGSGNYGYNAGNDTYGDMLEMGILDPTKVTRCALQFAASIAGLMITTEAMVAEIPQ 526          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_POLNS (60 kDa chaperonin OS=Polynucleobacter necessarius (strain STIR1) GN=groL PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.888e-58
Identity = 115/239 (48.12%), Postives = 161/239 (67.36%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +I EE+G+ LEK  L+ LG  K++ + K++T+I+DGAGD K+IE R + IR  +E +TSDYDKEKLQER+AKL+GGVAV+++G A+E E+ EKK RV DAL+AT+AAVEEGI+PGGGV               N DQ  G+ I+  A++ P+ TI               ++    + GY+AA GEY D+V  G+IDP KV + ALV+AASV+ L+ TT+  + E PK+
Sbjct:  290 EDIAILTGGIVIAEEIGLTLEKTTLEHLGQAKRLEVGKENTIIIDGAGDAKAIEARVKNIRVQVEEATSDYDKEKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVDDALHATRAAVEEGIIPGGGVALIRAMQGIKGLKGDNADQDAGISIVLRAMQEPLRTI-VSNAGEDAGVVVNAVQASKGNNGYNAATGEYGDLVAQGVIDPTKVTKAALVNAASVAGLLLTTDCAISEAPKD 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BURP8 (60 kDa chaperonin OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=groL PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.888e-58
Identity = 118/244 (48.36%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I EE G+ LEK  L  LG  K++ + K++T I+DGAG+  +IE R +Q+R+ IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIV GGGV               N DQ  G++I+  A++ P+  I               +     + GY+AA GEY D+V++G++DP KV RTAL +AASV+ L+ TT+A V ELPKE    P
Sbjct:  290 EDIAILTGGQVIAEETGLTLEKATLQELGQAKRIEVGKENTTIIDGAGEAANIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRARSAISGVKGDNADQDAGIKIVLRAMEEPLRQI-VTNGGEEASVVVAAVAGGTGNYGYNAATGEYGDLVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVCELPKEDAPMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.888e-58
Identity = 116/242 (47.93%), Postives = 167/242 (69.01%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+AVLTGGD+I+E++G+ LE V +DMLG  +KVTI+KD T I+ G  +K ++E+R  QI   +E++ SD+D+EKLQERLAKL+GGVAV+K+G A+E E+ ++K R+ DALNATKAAVEEGIVPGGG                   D+K G  +I  AL+ P+  I             K+ E D  ++GYDA KGE+VDM+ +G+ DP KV+R+AL +AAS+++++ TTE ++V+ P++ K
Sbjct:  289 QDIAVLTGGDVISEDIGLKLENVTIDMLGKARKVTITKDKTTIVAGTDNKAAVEKRIAQIHKQMEDTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLLHLTKKIDAIKAGLADDEKTGADLIARALEAPLRQIADNAGVEGSVIAQKVRELD-FNIGYDAMKGEFVDMLAAGVADPAKVVRSALQNAASIAAMVLTTEVLIVDKPEKKK 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_VIBFM (60 kDa chaperonin OS=Vibrio fischeri (strain MJ11) GN=groL PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 7.690e-58
Identity = 119/243 (48.97%), Postives = 166/243 (68.31%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+AVLT G +I+EE+G++LEKV L+ LG  K+VTI+K+ T I+DG+G++  I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV               N +Q +G+++   A++ P+  I              +   + +  GY+AA GEY DM++ GI+DP KV R+AL  AASV+ LM TTEA+V + P++   A
Sbjct:  290 QDIAVLTAGSVISEEIGLELEKVVLEDLGQAKRVTITKETTTIIDGSGEETIIQGRVSQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRVASKVAGLVGDNEEQNVGIRVALRAMEAPIRQITKNAGEEDSVVANNVKAGEGS-YGYNAATGEYGDMIEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDKPQDSGSA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_VIBF1 (60 kDa chaperonin OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=groL PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 7.690e-58
Identity = 119/243 (48.97%), Postives = 166/243 (68.31%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+AVLT G +I+EE+G++LEKV L+ LG  K+VTI+K+ T I+DG+G++  I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEG+V GGGV               N +Q +G+++   A++ P+  I              +   + +  GY+AA GEY DM++ GI+DP KV R+AL  AASV+ LM TTEA+V + P++   A
Sbjct:  290 QDIAVLTAGSVISEEIGLELEKVVLEDLGQAKRVTITKETTTIIDGSGEETIIQGRVSQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRVASKVAGLVGDNEEQNVGIRVALRAMEAPIRQITKNAGEEDSVVANNVKAGEGS-YGYNAATGEYGDMIEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDKPQDSGSA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_THIDA (60 kDa chaperonin OS=Thiobacillus denitrificans (strain ATCC 25259) GN=groL PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 7.690e-58
Identity = 119/243 (48.97%), Postives = 159/243 (65.43%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG +I EE+G+ LEK  L  LG  K++ + K++T I+DGAGD  +I+ R  QI   IE  TSDYDKEKLQER AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV               N DQ  GV+I+  A++ P+  I             K+LE +  + GY+A   EY DMV  G++DP KV RTAL +AAS++ LM TT+ +V +LP++   A
Sbjct:  290 EDMAILTGGTVIAEEVGLSLEKATLQDLGRAKRIEVGKENTTIIDGAGDGNAIKGRIAQINKQIEEVTSDYDKEKLQERKAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRAKAAAAAIKGDNHDQDAGVKIVLRAIEEPLRQIVKNCGDEPSVVVNKVLEGEG-NFGYNAGTSEYGDMVAMGVLDPTKVTRTALQNAASIAGLMLTTDCMVADLPEDKAPA 531          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_VIBHA4.508e-5849.3760 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=... [more]
CH60_VIBHB5.888e-5849.3760 kDa chaperonin OS=Vibrio harveyi (strain ATCC B... [more]
CH60_THEM45.888e-5847.3560 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]
CH60_SHESW5.888e-5850.4260 kDa chaperonin OS=Shewanella sp. (strain W3-18-... [more]
CH60_POLNS5.888e-5848.1260 kDa chaperonin OS=Polynucleobacter necessarius ... [more]
CH60_BURP85.888e-5848.3660 kDa chaperonin OS=Burkholderia phymatum (strain... [more]
CH602_GLOVI5.888e-5847.9360 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH60_VIBFM7.690e-5848.9760 kDa chaperonin OS=Vibrio fischeri (strain MJ11)... [more]
CH60_VIBF17.690e-5848.9760 kDa chaperonin OS=Vibrio fischeri (strain ATCC ... [more]
CH60_THIDA7.690e-5848.9760 kDa chaperonin OS=Thiobacillus denitrificans (s... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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