DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.004e-57
Identity = 112/242 (46.28%), Postives = 164/242 (67.77%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKE 727
            QD+A+LTGG +ITEE+G+ L+K  +D LG   KV + K++T+I+ GAG    I +R  QI+  IE +TS++DKEKLQERLAKL+GGVAV+++G A+E E+ +KK R+ DALNAT+AAVEEGIVPGGGV               + D+K G+ I++ AL+ P+  I             K+   D   +G++A  GE+V+M+ +GI+DP KV RTAL +AAS+++++ TTE +V E P++ K+
Sbjct:  289 QDIAILTGGTVITEEVGLKLDKATIDQLGRANKVRVKKEETIIVGGAGSTDEITKRVAQIKKQIEETTSEFDKEKLQERLAKLAGGVAVIQVGAATETEMKDKKLRIEDALNATRAAVEEGIVPGGGVAYISALKGLDGLDAGSLDEKTGIDIVRRALEEPLRQIASNAGLEGSVIVEKVKNAD-PGIGFNALTGEFVNMIDAGIVDPAKVTRTALQNAASIAAMILTTETLVAEKPEKEKD 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_LACPL (60 kDa chaperonin OS=Lactobacillus plantarum GN=groL PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.004e-57
Identity = 119/243 (48.97%), Postives = 165/243 (67.90%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A+LTGG +IT++LG++L+   +D LG   KVT++KD+T I++GAG K +I ER E IR+ I  +TSD+DKEKLQERLAKL+GGVAV+++G A+E E+ E+K R+ DALNAT+AAVEEG V GGG                  D + G+ I++ AL+ PV  I             K+ EQ    +G++AA  E+VDM+K+GI+DP KV R+AL +AASVS+L+ TTEA+V E P+E   A
Sbjct:  288 QDIAILTGGTVITDDLGLELKDTTIDQLGQANKVTVTKDNTTIVEGAGSKDAISERVEFIRNQIGETTSDFDKEKLQERLAKLAGGVAVVRVGAATETELKERKYRIEDALNATRAAVEEGFVAGGGTALINVIKDVAALKETG-DVQTGINIVKRALEEPVRQIAENAGLEGSVIVEKMKEQ-KPGVGFNAATDEWVDMIKAGIVDPTKVTRSALQNAASVSALLLTTEAVVAEKPEENAPA 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.004e-57
Identity = 119/244 (48.77%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+AVLTGG +++E++G+ LE +++  LGT K+V I K++T I+DGAG    I+ R +QIR+ IE +TSDYD+EKLQERLAKL GGVAV+ +G A+E E+ EKKDRV DALNAT+AAVEEGIVPGGG               A+ D+  GV II+ A++ P+  I             ++ E      G++AA GEY D++  G+IDP KV R AL +AASV+SL+ TTE  + E P+  K+ P
Sbjct:  290 QDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKPADDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVRE-GKDGFGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.004e-57
Identity = 119/244 (48.77%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+AVLTGG +++E++G+ LE +++  LGT K+V I K++T I+DGAG    I+ R +QIR+ IE +TSDYD+EKLQERLAKL GGVAV+ +G A+E E+ EKKDRV DALNAT+AAVEEGIVPGGG               A+ D+  GV II+ A++ P+  I             ++ E      G++AA GEY D++  G+IDP KV R AL +AASV+SL+ TTE  + E P+  K+ P
Sbjct:  290 QDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATETEMKEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKPADDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVRE-GKDGFGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BUCAT (60 kDa chaperonin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=groL PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.004e-57
Identity = 121/243 (49.79%), Postives = 159/243 (65.43%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+++LTGG +I+EEL M+LEK  L+ LG  K+V ISKD T I+ G G+K SI+ R  QIR  I+ +TSDYDKEKL ERLAKLSGGVAVLK+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A++ P+  I               ++    + GY+AA  +Y DM+  GI+DP KV R+AL  AASV+ LM TTE +V +LPKE K +
Sbjct:  290 QDISILTGGSVISEELAMELEKSTLEDLGQAKRVVISKDTTTIIGGVGEKHSIQSRISQIRQEIQEATSDYDKEKLNERLAKLSGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAGKIADLRGQNEDQNVGIRVALRAMEAPLRQIVSNSGEEPSVVTNN-VKDGKGNYGYNAATDKYGDMIDFGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKEDKSS 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_PSYIN (60 kDa chaperonin 2 OS=Psychromonas ingrahamii (strain 37) GN=groL2 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.004e-57
Identity = 117/237 (49.37%), Postives = 159/237 (67.09%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 712
            QD+A LTGG +I+EE+G+D+EKV L+ LG  K++ I+KD+T I+DG GD+  I  R  QI+  IE STSDYDKEKLQER AKL+GGVAV+K+G ++E E+ EKKDRV DAL+AT+AAVEEG+V GGGV            +  N DQ +G+++   A++ P+  I               + Q   + GY+A  GEY DM++ GIIDP KV R+AL  AASV++LM TTE ++ + P
Sbjct:  289 QDIATLTGGTVISEEIGLDMEKVQLEDLGQAKRIVINKDETTIIDGIGDESVINARVSQIKQQIEASTSDYDKEKLQERSAKLAGGVAVIKVGASTEVEMKEKKDRVDDALHATRAAVEEGVVAGGGVALVRVAAILKGLTGENEDQNVGIRVALRAMEAPLRQIVENCGEEASVVANN-VRQGEGNYGYNATTGEYGDMLEMGIIDPTKVARSALQFAASVAALMITTECMITDRP 524          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CLOTE (60 kDa chaperonin OS=Clostridium tetani GN=groL PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.312e-57
Identity = 113/239 (47.28%), Postives = 164/239 (68.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A LTGG +I+EE+G DL+ V +DMLG  + V I+K+ T I++G G+KK IE+R  QI++ IE +TS++D+EKLQERLAKL+GGVAV+K+G A+E E+ E+K R+ DAL ATKAAVEEGI+PGGG             ++   D K+G+ I++ +L+ PV  I             K ++     +GYDA   EYV+M+K+GI+DP KV R+AL +AASV+S   TTEA + ++P++
Sbjct:  290 EDIATLTGGQVISEEIGRDLKDVTVDMLGRAESVKITKETTTIVNGKGNKKEIEDRVNQIKAQIEETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALAATKAAVEEGIIPGGGTAYAMVIKEVEKLNSETHDIKLGIDIVKKSLEEPVRQIACNAGVEGSIVIEK-VKHSEAGIGYDALNNEYVNMIKAGIVDPTKVSRSALQNAASVASTFLTTEAAIADIPEK 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CLOB8 (60 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groL PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.312e-57
Identity = 121/244 (49.59%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A LTGG +I EELG +L+ V +DMLGT   V +SK++TVI++G GD  +I+ER  QI++ IE ++S++DKEKLQERLAKL+GGVAV+K+G A+E E+ EKK R+ DAL ATKAAVEEGIV GGG             ++   D +IG+ II  +L+ PV  I             K ++     +GYDA  GEY++M+K GI+DP KV R+AL +AASV+S   TTEA V ++P   KE P
Sbjct:  288 QDIATLTGGTVIAEELGRELKDVTIDMLGTADSVKVSKENTVIVNGKGDSNAIKERINQIKAQIEETSSEFDKEKLQERLAKLAGGVAVIKVGAATETELKEKKLRIEDALAATKAAVEEGIVAGGGTAYVNVINEVAKLTSDVADTQIGINIIVKSLEEPVRQIATNAGVEGSVIIEK-VKNSEPGIGYDALHGEYINMIKGGIVDPTKVTRSALQNAASVASTFLTTEAAVADIP--AKETP 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_BUCAP (60 kDa chaperonin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=groL PE=3 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 1.312e-57
Identity = 120/243 (49.38%), Postives = 161/243 (66.26%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+++LTGG +I+EEL MDLEK  L+ LG  K+V I+KD T I+ G+G+K++I+ R  QIR  I+ +TSDYDKEKL ERLAKLSGGVAVLK+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A++ P+  I               ++    + GY+AA  EY DM+  GI+DP KV R+AL  AASV+ LM TTE +V +LP+E K +
Sbjct:  290 QDISILTGGSVISEELAMDLEKSTLEDLGQAKRVVINKDTTTIIGGSGEKQAIQSRIGQIRQEIQEATSDYDKEKLNERLAKLSGGVAVLKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAGKISNLRGHNEDQNVGIRVALRAMEAPLRQIVSNSGEEPSVVTNN-VKDGKGNYGYNAATDEYGDMIDFGILDPTKVTRSALQYAASVAGLMITTECMVTDLPREDKSS 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ARCB4 (60 kDa chaperonin OS=Arcobacter butzleri (strain RM4018) GN=groL PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.312e-57
Identity = 121/243 (49.79%), Postives = 161/243 (66.26%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+AVLTGG +I+EE+GM LE      LGT  K+ I KD+T I+DG GD + +  R  QI++ I N+TSDYD+EKLQERLAKLSGGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGG              T   D++IG  I+  A+  P+  I             ++ +  N +LG++AA GEYVDM ++GI+DP KV R A+ +A SV+SL+ TTEA V ++ KE K A
Sbjct:  289 EDIAVLTGGTVISEEMGMKLETAEFSCLGTASKIVIDKDNTTIVDGNGDNERVVARVNQIKAEISNTTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATRAAVEEGIVIGGGAALIKASKKVNLDLTG--DERIGADIVLRAISAPLKQIAINAGFDAGVVANEVEKSSNENLGFNAATGEYVDMFEAGIVDPAKVERVAMQNAVSVASLLLTTEATVSDI-KEDKPA 528          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PELTS1.004e-5746.2860 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]
CH60_LACPL1.004e-5748.9760 kDa chaperonin OS=Lactobacillus plantarum GN=gr... [more]
CH60_DESVV1.004e-5748.7760 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH1.004e-5748.7760 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_BUCAT1.004e-5749.7960 kDa chaperonin OS=Buchnera aphidicola subsp. Ac... [more]
CH602_PSYIN1.004e-5749.3760 kDa chaperonin 2 OS=Psychromonas ingrahamii (st... [more]
CH60_CLOTE1.312e-5747.2860 kDa chaperonin OS=Clostridium tetani GN=groL PE... [more]
CH60_CLOB81.312e-5749.5960 kDa chaperonin OS=Clostridium beijerinckii (str... [more]
CH60_BUCAP1.312e-5749.3860 kDa chaperonin OS=Buchnera aphidicola subsp. Sc... [more]
CH60_ARCB41.312e-5749.7960 kDa chaperonin OS=Arcobacter butzleri (strain R... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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