DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ACTP2 (60 kDa chaperonin OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=groL PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.312e-57
Identity = 120/245 (48.98%), Postives = 165/245 (67.35%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE+STSDYDKEKLQER+AKL+ GVAV+K+G A+E  + EKKDRV DAL+AT+AAVEEGIVPGGGV             T  N +Q +G+++   A++ P+  I             + ++  N + GY+A   +Y DM++ GI+DP KV R+AL  AAS++ LM TTE ++ +LPKE K  P
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEELGQAKRVVITKDNTTIIDGIGDEAQIKARVAQIRQQIEDSTSDYDKEKLQERVAKLACGVAVIKVGAATEVAMKEKKDRVDDALHATRAAVEEGIVPGGGVALVRAASKVAATLTGDNEEQNVGIKLALRAMEAPLRQI-VTNAGEEASVVARNVKDGNGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFAASIAGLMITTECMITDLPKEEKLDP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_VIBVY (60 kDa chaperonin 1 OS=Vibrio vulnificus (strain YJ016) GN=groL1 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.312e-57
Identity = 118/244 (48.36%), Postives = 166/244 (68.03%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G++LEK  L+ LG  K+V+I+K++T I+DG G++  I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGGV               N +Q +G+++   A++ P+  I              +   + +  GY+AA G Y DM++ GI+DP KV R+AL  AASV+ LM TTEA+V +LP++    P
Sbjct:  290 QDIAILTGGTVISEEVGLELEKATLEDLGQAKRVSITKENTTIIDGVGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVAGGGVALIRAASKIVDLQGDNEEQNVGIRVALRAMEAPLRQITKNAGDEESVVANNVRAGEGS-YGYNAATGVYGDMLEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDLPQKDSGMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH601_VIBVU (60 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 PE=3 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 1.312e-57
Identity = 118/244 (48.36%), Postives = 166/244 (68.03%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G++LEK  L+ LG  K+V+I+K++T I+DG G++  I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGGV               N +Q +G+++   A++ P+  I              +   + +  GY+AA G Y DM++ GI+DP KV R+AL  AASV+ LM TTEA+V +LP++    P
Sbjct:  290 QDIAILTGGTVISEEVGLELEKATLEDLGQAKRVSITKENTTIIDGVGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVAGGGVALIRAASKIVDLQGDNEEQNVGIRVALRAMEAPLRQITKNAGDEESVVANNVRAGEGS-YGYNAATGVYGDMLEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDLPQKDSGMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSEFS (60 kDa chaperonin OS=Pseudomonas fluorescens (strain SBW25) GN=groL PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.713e-57
Identity = 115/238 (48.32%), Postives = 163/238 (68.49%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK 715
            QD+AVLTGG +I+EE+G+ LE   L+ LG+ K+VTISK++T+I+DGAG ++ I+ R  QIR+ +  ++SDYD+EKLQERLAKLSGGVAV+K+G  SE E+ EKK RV DAL+AT+AAVEEG+VPGGGV            +  N DQ +G+ +++ A++ P+  I             + ++    + GY+AA G Y DM++ GI+DP KV R+AL  AAS+  L+ TTEA + + PK
Sbjct:  290 QDIAVLTGGTVISEEIGLSLESATLENLGSAKRVTISKENTIIVDGAGVEQDIQARITQIRAQVAETSSDYDREKLQERLAKLSGGVAVIKVGAGSEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRALEALTNLTGDNADQNVGIAVLRRAVEAPLRQIAANSGDEPSVVVNE-VKNGKGNYGYNAATGVYGDMIEMGILDPTKVTRSALQAAASIGGLILTTEAAIADKPK 526          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PASMU (60 kDa chaperonin OS=Pasteurella multocida GN=groL PE=3 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.713e-57
Identity = 119/241 (49.38%), Postives = 160/241 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIV GGGV               N +Q +G+++   A++ P+  I               ++    + GY+A   +Y DM++ GI+DP KV R+AL  AASV+ LM TTE +V +LPKE K
Sbjct:  290 QDIAILTAGTVISEEIGMELEKATLEDLGQAKRVVINKDNTTIIDGIGDEAQIQGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAASKVAGLQGDNEEQNVGIKLALRAMEAPLRQI-VANAGEEASIVASAVKNGEGNFGYNAGTEQYGDMIEMGILDPTKVTRSALQFAASVAGLMITTECMVTDLPKEDK 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HELAH (60 kDa chaperonin OS=Helicobacter acinonychis (strain Sheeba) GN=groL PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.713e-57
Identity = 125/244 (51.23%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+AVLTGG +I+EELG+ LE   ++ LG   ++ I KD+T I+DG G    +++R  QI++ I ++TSDYDKEKLQERLAKLSGGVAV+K+G ASE E+ EKKDRV DAL+ATKAAVEEGIV GGG                N D+K+G +II  A+K P+  I             ++ + +    G++A+ GEYVDM K GIIDPLKV R AL +A SVSSL+ TTEA V E+ KE K  P
Sbjct:  289 KDIAVLTGGQVISEELGLTLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHLH--LNGDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVQKHEG-HFGFNASNGEYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEI-KEEKATP 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_ACTSZ (60 kDa chaperonin OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=groL PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.713e-57
Identity = 122/245 (49.80%), Postives = 162/245 (66.12%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTA-NFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LT G +I+EE+GM+LEK  L+ LG  K+V I+KD+T I+DG GD+  I+ R  QIR  IE STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKKDRV DAL+AT+AAVEEGIV GGGV                N +Q +G+++   A++ P+  I               ++    + GY+A   EY DM+  GI+DP KV R+AL  AAS++ LM TTEA+V ELPK+ K  P
Sbjct:  290 QDIAILTAGTVISEEIGMELEKAALEDLGQAKRVVINKDNTTIIDGVGDEAQIKGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVAGGGVALIRAASKAAANLQGDNEEQNVGIKLALRAMEAPLRQI-VANAGEEASVVASAVKNGEGNYGYNAGTEEYGDMIAMGILDPTKVTRSALQFAASIAGLMITTEAMVTELPKDDKLDP 533          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SHEB5 (60 kDa chaperonin OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=groL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 118/242 (48.76%), Postives = 159/242 (65.70%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKE 727
            QD+A+LTGG +I EE+G++LEK  L+ LGT K+V I+KD+T I+DG G++  I  R  QI+  +E STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N DQK GV I   A++ P+  I               ++  + + GY+A    Y DM++ GI+DP KV R AL  AAS++ LM TTEA+V E+P+   +
Sbjct:  290 QDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQTQIAARVSQIKQQVEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIAEVEVLNEDQKHGVVIALRAMEAPLRQI-ATNAGEEASVVANTVKNGSGNFGYNAGNDTYGDMLEMGILDPTKVTRCALQFAASIAGLMITTEAMVAEIPQNASQ 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSEU5 (60 kDa chaperonin OS=Pseudomonas stutzeri (strain A1501) GN=groL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 119/244 (48.77%), Postives = 164/244 (67.21%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G+ LE   L+ LG  K+V ++K++T I+DGAG +  IE R  QIR  IE++TSDYDKEKLQERLAKL+GGVAV+K+G  +E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N DQ +G+ +++ A++ P+  I             K ++Q + + G++AA   Y DM++ GI+DP KV R+AL  AAS+  LM TTEA+V E+  E K AP
Sbjct:  290 QDIAILTGGTVISEEVGLSLETATLEHLGNAKRVVLNKENTTIIDGAGAQADIEARVAQIRKQIEDTTSDYDKEKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAISELKGDNEDQNVGIALLRRAVEAPLRQIVANAGGEPSVVVDK-VKQGSGNYGFNAASDTYGDMIEMGILDPAKVTRSALQAAASIGGLMVTTEAMVAEV-VEDKPAP 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSEST (60 kDa chaperonin OS=Pseudomonas stutzeri GN=groL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.238e-57
Identity = 114/239 (47.70%), Postives = 162/239 (67.78%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I+EE+G+ LE   L+ LG  K+V ++K++T I+DGAG +  IE R  QIR  +E++TSDYDKEKLQERLAKL+GGVAV+K+G  +E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N DQ +G+ +++ A++ P+  I             K ++Q   + G++AA   Y DM++ GI+DP KV R+AL  AAS+ SLM TTEA++ E+ ++
Sbjct:  290 QDIAILTGGTVISEEVGLSLETATLEHLGNAKRVVLNKENTTIIDGAGQQADIEARVAQIRKQVEDTTSDYDKEKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVAWVRALQAISELKGENEDQNVGIALLRRAVEAPLRQIVTNAGGEPSVVVDK-VKQGEGNYGFNAASDTYGDMIEMGILDPAKVTRSALQAAASIGSLMITTEAMIAEVAED 527          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ACTP21.312e-5748.9860 kDa chaperonin OS=Actinobacillus pleuropneumoni... [more]
CH601_VIBVY1.312e-5748.3660 kDa chaperonin 1 OS=Vibrio vulnificus (strain Y... [more]
CH601_VIBVU1.312e-5748.3660 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 ... [more]
CH60_PSEFS1.713e-5748.3260 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH60_PASMU1.713e-5749.3860 kDa chaperonin OS=Pasteurella multocida GN=groL... [more]
CH60_HELAH1.713e-5751.2360 kDa chaperonin OS=Helicobacter acinonychis (str... [more]
CH60_ACTSZ1.713e-5749.8060 kDa chaperonin OS=Actinobacillus succinogenes (... [more]
CH60_SHEB52.238e-5748.7660 kDa chaperonin OS=Shewanella baltica (strain OS... [more]
CH60_PSEU52.238e-5748.7760 kDa chaperonin OS=Pseudomonas stutzeri (strain ... [more]
CH60_PSEST2.238e-5747.7060 kDa chaperonin OS=Pseudomonas stutzeri GN=groL ... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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