DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_YERPP (60 kDa chaperonin OS=Yersinia pestis (strain Pestoides F) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/243 (48.15%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A LT G +I+EE+G++LEK  L+ LG  K+V I+KD T+I+DG GD+ +I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A+++P+  I             K+   + +  GY+A   EY DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LP++ K A
Sbjct:  290 QDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAAHAIAGLKGDNEDQNVGIKVALRAMESPLRQIVVNAGEEASVIANKVKAGEGS-FGYNAYTEEYGDMIAMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPRDDKGA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_YERPN (60 kDa chaperonin OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/243 (48.15%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A LT G +I+EE+G++LEK  L+ LG  K+V I+KD T+I+DG GD+ +I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A+++P+  I             K+   + +  GY+A   EY DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LP++ K A
Sbjct:  290 QDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAAHAIAGLKGDNEDQNVGIKVALRAMESPLRQIVVNAGEEASVIANKVKAGEGS-FGYNAYTEEYGDMIAMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPRDDKGA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_YERPG (60 kDa chaperonin OS=Yersinia pestis bv. Antiqua (strain Angola) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/243 (48.15%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A LT G +I+EE+G++LEK  L+ LG  K+V I+KD T+I+DG GD+ +I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A+++P+  I             K+   + +  GY+A   EY DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LP++ K A
Sbjct:  290 QDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAAHAIAGLKGDNEDQNVGIKVALRAMESPLRQIVVNAGEEASVIANKVKAGEGS-FGYNAYTEEYGDMIAMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPRDDKGA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_YERPE (60 kDa chaperonin OS=Yersinia pestis GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/243 (48.15%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A LT G +I+EE+G++LEK  L+ LG  K+V I+KD T+I+DG GD+ +I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A+++P+  I             K+   + +  GY+A   EY DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LP++ K A
Sbjct:  290 QDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAAHAIAGLKGDNEDQNVGIKVALRAMESPLRQIVVNAGEEASVIANKVKAGEGS-FGYNAYTEEYGDMIAMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPRDDKGA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_YERPB (60 kDa chaperonin OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/243 (48.15%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A LT G +I+EE+G++LEK  L+ LG  K+V I+KD T+I+DG GD+ +I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A+++P+  I             K+   + +  GY+A   EY DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LP++ K A
Sbjct:  290 QDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAAHAIAGLKGDNEDQNVGIKVALRAMESPLRQIVVNAGEEASVIANKVKAGEGS-FGYNAYTEEYGDMIAMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPRDDKGA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_YERPA (60 kDa chaperonin OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/243 (48.15%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A LT G +I+EE+G++LEK  L+ LG  K+V I+KD T+I+DG GD+ +I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A+++P+  I             K+   + +  GY+A   EY DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LP++ K A
Sbjct:  290 QDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAAHAIAGLKGDNEDQNVGIKVALRAMESPLRQIVVNAGEEASVIANKVKAGEGS-FGYNAYTEEYGDMIAMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPRDDKGA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_YERP3 (60 kDa chaperonin OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/243 (48.15%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            QD+A LT G +I+EE+G++LEK  L+ LG  K+V I+KD T+I+DG GD+ +I+ R  QIR  IE++TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQ +G+++   A+++P+  I             K+   + +  GY+A   EY DM+  GI+DP KV R+AL  AAS++ LM TTE +V +LP++ K A
Sbjct:  290 QDIATLTAGTVISEEIGLELEKTTLEDLGQAKRVVINKDTTIIIDGVGDEAAIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRAAHAIAGLKGDNEDQNVGIKVALRAMESPLRQIVVNAGEEASVIANKVKAGEGS-FGYNAYTEEYGDMIAMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPRDDKGA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SHEFN (60 kDa chaperonin OS=Shewanella frigidimarina (strain NCIMB 400) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/239 (48.95%), Postives = 160/239 (66.95%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I EE+G++LEK  L+ LGT K+V I+KD+T I+DG+GD+  I  R  QI+  +E+STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQK GV I   A++ P+  I               ++    + GY+A    Y DM++ GI+DP KV R+AL  AAS++ LM TTEA++ E+P++
Sbjct:  290 QDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVIITKDNTTIIDGSGDQVQISARVSQIKQQVEDSTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVASKIKDVEVLNEDQKHGVVIALRAMEAPLRQI-ATNAGQEASVVANTVKNGEGNFGYNAGNDTYGDMLEMGILDPTKVTRSALQFAASIAGLMITTEAMIAEVPQD 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SHEDO (60 kDa chaperonin OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 117/239 (48.95%), Postives = 160/239 (66.95%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I EE+G++LEK  L+ LGT K+V I+KD+T I+DG+G+   I  R  QI+  +E+S+SDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N DQK GV I   A++ P+  I               ++    + GY+A    Y DM++ GI+DP KV R+AL  AAS++ LM TTEA++ E+P+E
Sbjct:  290 QDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGSGEHTQITSRVAQIKQQMEDSSSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASMIADIEVLNEDQKHGVVIALRAMEAPLRQI-ATNAGQEASVVANTVKNGTGNYGYNAGNDTYGDMLEMGILDPTKVTRSALQFAASIAGLMITTEAMIAEIPQE 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SHEB8 (60 kDa chaperonin OS=Shewanella baltica (strain OS185) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.922e-57
Identity = 118/242 (48.76%), Postives = 159/242 (65.70%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKE 727
            QD+A+LTGG +I EE+G++LEK  L+ LGT K+V I+KD+T I+DG G++  I  R  QI+  +E STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N DQK GV I   A++ P+  I               ++  + + GY+A    Y DM++ GI+DP KV R AL  AAS++ LM TTEA+V E+P+   +
Sbjct:  290 QDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQTQIAARVSQIKQQVEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIADVEVLNEDQKHGVVIALRAMEAPLRQI-ATNAGEEASVVANTVKNGSGNYGYNAGNDTYGDMLEMGILDPTKVTRCALQFAASIAGLMITTEAMVAEIPQNASQ 530          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_YERPP2.922e-5748.1560 kDa chaperonin OS=Yersinia pestis (strain Pesto... [more]
CH60_YERPN2.922e-5748.1560 kDa chaperonin OS=Yersinia pestis bv. Antiqua (... [more]
CH60_YERPG2.922e-5748.1560 kDa chaperonin OS=Yersinia pestis bv. Antiqua (... [more]
CH60_YERPE2.922e-5748.1560 kDa chaperonin OS=Yersinia pestis GN=groL PE=3 ... [more]
CH60_YERPB2.922e-5748.1560 kDa chaperonin OS=Yersinia pseudotuberculosis s... [more]
CH60_YERPA2.922e-5748.1560 kDa chaperonin OS=Yersinia pestis bv. Antiqua (... [more]
CH60_YERP32.922e-5748.1560 kDa chaperonin OS=Yersinia pseudotuberculosis s... [more]
CH60_SHEFN2.922e-5748.9560 kDa chaperonin OS=Shewanella frigidimarina (str... [more]
CH60_SHEDO2.922e-5748.9560 kDa chaperonin OS=Shewanella denitrificans (str... [more]
CH60_SHEB82.922e-5748.7660 kDa chaperonin OS=Shewanella baltica (strain OS... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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