DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5520 contig Csv1_Contig5520:36..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_METPP (60 kDa chaperonin OS=Methylibium petroleiphilum (strain PM1) GN=groL PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.817e-57
Identity = 121/243 (49.79%), Postives = 161/243 (66.26%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG +I EE+G+ LEKV L  LG  K+V + K++T I+DGAG    IE R +Q+R  IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIV GGGV               N DQ  G+++I  A++ P+  I              +L     + GY+AA G Y DM++ GI+DP KV RTAL +AASV++LM TTEA+V E PK+   A
Sbjct:  290 EDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRVEVGKENTTIIDGAGAAGDIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALLRAKQAAGAIKGDNADQDAGIKLILRAIEEPLRIIVTNAGDEASVVVNAVL-AGKGNYGYNAANGTYGDMIEMGILDPTKVTRTALQNAASVAALMLTTEAMVAESPKDDAPA 531          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_FRAP2 (60 kDa chaperonin OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=groL PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.817e-57
Identity = 116/244 (47.54%), Postives = 164/244 (67.21%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTG  +I+E+LGM LE+ N++ LGT  +V +SKDDT I+DGAG+K +I  R  Q+++ +  +TSDYDKEKLQERLAKLSGGVAV+++G  +EAE+ EKKDRV DAL+AT+AAVEEGIV GGGV               N DQ  G+ +++ A++ P+  I             ++  ++  + GY+AA   Y DMV+ GI+DP KV R+AL  AAS++ LM TTEA+V E+ ++    P
Sbjct:  290 EDIAILTGATVISEDLGMKLEEANMEHLGTASRVQVSKDDTTIIDGAGNKDAIVNRVNQLKANVAEATSDYDKEKLQERLAKLSGGVAVIRVGAVTEAEMKEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGLVGDNDDQNHGIALLKKAIEAPLRQIVSNAGGESSVVVNEVKAKEG-NYGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMVAEIKEDAPAMP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_DESOH (60 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groL PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.817e-57
Identity = 114/243 (46.91%), Postives = 167/243 (68.72%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A LTGG +++E++G++LE + L  LG  K++TI KD+T I+DGAG K  IE R +QIR+ IE++TSDYD+EKLQERLAKL GGVAV+ +G A+E E+ EKK RV DALNAT+AAVEEG++PGGGV               + ++K+GV+++  A++ P+  I             K ++ +    GY+AA G+Y D++ +G+IDP KV+R AL +A SV+S+M TTEA++ E P + + A
Sbjct:  290 EDIATLTGGQVVSEDVGINLEGITLGDLGHAKRITIDKDNTTIVDGAGKKADIEGRVKQIRAQIEDTTSDYDREKLQERLAKLVGGVAVINVGAATETEMKEKKARVEDALNATRAAVEEGVLPGGGVALVRCLDALSKIKIKS-EEKLGVKVVMRAIEEPLRRIANNAGVEGSVVIEK-VKNETGSFGYNAATGDYGDLIAAGVIDPTKVVRFALQNACSVASVMLTTEAMIAEKPSKEEPA 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_DECAR (60 kDa chaperonin OS=Dechloromonas aromatica (strain RCB) GN=groL PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.817e-57
Identity = 118/239 (49.37%), Postives = 162/239 (67.78%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+A+LTGG +I EE G+ LEK  L  LG  K++ ++K++T I+DGAG+  +IE R +QIR  IE +TSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIV GGGV               N DQ  G++I+  A++ P+  I             K +++   + GY+A+ GEY DMV+ G++DP KV RTAL +AASV+ LM TTE +V EL ++
Sbjct:  290 EDIAILTGGTVIAEETGLTLEKAVLKDLGQAKRIEVAKENTTIIDGAGEAAAIEARVKQIRIQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRARAAVGKLKGDNHDQDAGIKIVLRAMEQPLREIVANAGDEPSVVVDK-VQRGKGNYGYNASTGEYGDMVEMGVLDPTKVTRTALQNAASVAGLMLTTECMVAELAED 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_SHEPW (60 kDa chaperonin OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=groL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.985e-57
Identity = 119/244 (48.77%), Postives = 160/244 (65.57%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I EE+G++LEK  L+ LGT K+V I+KDDT I+DG G++  I+ R  QI+   E STSDYDKEKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+V GGGV               N DQK GV I   A++ P+  I               ++    + GY+A    Y DM++ GI+DP KV R+AL  A+S++ LM TTEA+V E+P++   AP
Sbjct:  290 QDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDDTTIIDGTGEETQIKARVAQIKIQAEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVASKIGEVEVINEDQKHGVVIALRAMEAPLRQIATNAGEEGSVVANN-VKNGTGNYGYNAGNDTYGDMLEMGILDPTKVTRSALQFASSIAGLMITTEAMVGEIPQDAAGAP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_HELPJ (60 kDa chaperonin OS=Helicobacter pylori J99 GN=groL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.985e-57
Identity = 123/244 (50.41%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG +I+EELG+ LE   ++ LG   ++ I KD+T I+DG G    +++R  QI++ I ++TSDYDKEKLQERLAKLSGGVAV+K+G ASE E+ EKKDRV DAL+ATKAAVEEGIV GGG                + D+K+G +II  A+K P+  I             ++ + +    G++A+ G+YVDM K GIIDPLKV R AL +A SVSSL+ TTEA V E+ KE K AP
Sbjct:  289 KDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAQKVHL--NLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVQKHEG-HFGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEI-KEEKAAP 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CAMJR (60 kDa chaperonin OS=Campylobacter jejuni (strain RM1221) GN=groL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.985e-57
Identity = 118/244 (48.36%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG++I+EELG  LE   +  LG    V I KD+T I++GAG+K +I+ R  QI++ I  +TSDYD+EKLQERLAKLSGGVAV+K+G A+E E+ EKKDRV DAL+ATKAAVEEGIV GGG                  D+ IG  I++ AL+ P+  I              +    + + G+DAAKGEYV+M++SGIIDP+KV R AL++A SV+S++ TTEA + E+ ++    P
Sbjct:  289 EDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNGAGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQG--DEAIGAAIVERALRAPLRQIAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSVASMLLTTEATISEIKEDKPTMP 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CAMJJ (60 kDa chaperonin OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=groL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.985e-57
Identity = 118/244 (48.36%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG++I+EELG  LE   +  LG    V I KD+T I++GAG+K +I+ R  QI++ I  +TSDYD+EKLQERLAKLSGGVAV+K+G A+E E+ EKKDRV DAL+ATKAAVEEGIV GGG                  D+ IG  I++ AL+ P+  I              +    + + G+DAAKGEYV+M++SGIIDP+KV R AL++A SV+S++ TTEA + E+ ++    P
Sbjct:  289 EDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNGAGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQG--DEAIGAAIVERALRAPLRQIAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSVASMLLTTEATISEIKEDKPTMP 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CAMJE (60 kDa chaperonin OS=Campylobacter jejuni GN=groL PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 4.985e-57
Identity = 118/244 (48.36%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            +D+A+LTGG++I+EELG  LE   +  LG    V I KD+T I++GAG+K +I+ R  QI++ I  +TSDYD+EKLQERLAKLSGGVAV+K+G A+E E+ EKKDRV DAL+ATKAAVEEGIV GGG                  D+ IG  I++ AL+ P+  I              +    + + G+DAAKGEYV+M++SGIIDP+KV R AL++A SV+S++ TTEA + E+ ++    P
Sbjct:  289 EDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNGAGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQG--DEAIGAAIVERALRAPLRQIAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSVASMLLTTEATISEIKEDKPTMP 530          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CAMJ8 (60 kDa chaperonin OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=groL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.985e-57
Identity = 121/243 (49.79%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG++I+EELG  LE   +  LG    V I KD+T I++GAG+K +I+ R  QI++ I  +TSDYD+EKLQERLAKLSGGVAV+K+G A+E E+ EKKDRV DAL+ATKAAVEEGIV GGG                  D+ IG  I++ AL+ P+  I              +    + + G+DAAKGEYV+M++SGIIDP+KV R AL++A SV+S++ TTEA + E+ KE K A
Sbjct:  289 EDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNGAGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQG--DEAIGAAIVERALRAPLRQIAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSVASMLLTTEATISEI-KEDKPA 528          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_METPP3.817e-5749.7960 kDa chaperonin OS=Methylibium petroleiphilum (s... [more]
CH60_FRAP23.817e-5747.5460 kDa chaperonin OS=Francisella philomiragia subs... [more]
CH60_DESOH3.817e-5746.9160 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]
CH60_DECAR3.817e-5749.3760 kDa chaperonin OS=Dechloromonas aromatica (stra... [more]
CH60_SHEPW4.985e-5748.7760 kDa chaperonin OS=Shewanella piezotolerans (str... [more]
CH60_HELPJ4.985e-5750.4160 kDa chaperonin OS=Helicobacter pylori J99 GN=gr... [more]
CH60_CAMJR4.985e-5748.3660 kDa chaperonin OS=Campylobacter jejuni (strain ... [more]
CH60_CAMJJ4.985e-5748.3660 kDa chaperonin OS=Campylobacter jejuni subsp. j... [more]
CH60_CAMJE4.985e-5748.3660 kDa chaperonin OS=Campylobacter jejuni GN=groL ... [more]
CH60_CAMJ84.985e-5749.7960 kDa chaperonin OS=Campylobacter jejuni subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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