DC900313

Overview
NameDC900313
Unique NameDC900313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1041
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_AZOSE (60 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN=groL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.985e-57
Identity = 119/239 (49.79%), Postives = 161/239 (67.36%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            +D+AVLTGG +I EE+G+ LEK  L  LG   ++ I K++T+I+DGAG+   IE R +QIR+ IE +TSDYD+EKLQER+AKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEGIVPGGGV               N DQ  G++I+  AL+ P+  I             +++E    + GY+AA GEY D+V  G++DP KV R AL +AASV+ LM TT+ +V EL +E
Sbjct:  290 EDIAVLTGGQVIAEEVGLTLEKATLAELGQAARIEIGKENTIIIDGAGEGSRIEGRVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRARANLGTLKGDNHDQDAGIKIVLRALEQPLREIVANAGDEPSVVVNRVVE-GTGNFGYNAATGEYGDLVDMGVLDPTKVERIALQNAASVAGLMLTTDCMVGELAEE 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSEMY (60 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 6.510e-57
Identity = 115/235 (48.94%), Postives = 159/235 (67.66%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVE 706
            QD+A+LTGG +I+EE+G+ LE   L+ LG  K+V ++KD+T I+DGAG +  IE R  QIR  +E ++SDYDKEKLQERLAKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N DQ +G+ +++ A++ P+  I             K ++Q + + G++AA   Y DM++ GI+DP KV R+AL  AAS+  LM TTEA+V E
Sbjct:  290 QDIAILTGGTVISEEVGLSLESATLEHLGNAKRVVLNKDNTTIIDGAGAQADIEARVAQIRKQVEETSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKGDNEDQNVGIALLRRAVEAPLRQIVANAGGEPSVVVDK-VKQGSGNFGFNAATDTYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAE 523          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSEAE (60 kDa chaperonin OS=Pseudomonas aeruginosa GN=groL PE=1 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 6.510e-57
Identity = 116/239 (48.54%), Postives = 164/239 (68.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I+EE+G+ LE   L+ LG  K+V I+K++T I+DGAG +  IE R  QIR  IE +TSDYD+EKLQERLAKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N +Q +G+ +++ A+++P+  I             K ++Q + + G++AA G Y DM++ GI+DP KV R+AL  AAS+  LM TTEA+V E+ ++
Sbjct:  290 QDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKGDNEEQNVGIALLRRAVESPLRQIVANAGDEPSVVVDK-VKQGSGNYGFNAATGVYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAEIVED 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSEAB (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 6.510e-57
Identity = 116/239 (48.54%), Postives = 164/239 (68.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I+EE+G+ LE   L+ LG  K+V I+K++T I+DGAG +  IE R  QIR  IE +TSDYD+EKLQERLAKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N +Q +G+ +++ A+++P+  I             K ++Q + + G++AA G Y DM++ GI+DP KV R+AL  AAS+  LM TTEA+V E+ ++
Sbjct:  290 QDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKGDNEEQNVGIALLRRAVESPLRQIVANAGDEPSVVVDK-VKQGSGNYGFNAATGVYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAEIVED 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_PSEA8 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain LESB58) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 6.510e-57
Identity = 116/239 (48.54%), Postives = 164/239 (68.62%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKE 718
            QD+A+LTGG +I+EE+G+ LE   L+ LG  K+V I+K++T I+DGAG +  IE R  QIR  IE +TSDYD+EKLQERLAKL+GGVAV+K+G A+E E+ EKK RV DAL+AT+AAVEEG+VPGGGV               N +Q +G+ +++ A+++P+  I             K ++Q + + G++AA G Y DM++ GI+DP KV R+AL  AAS+  LM TTEA+V E+ ++
Sbjct:  290 QDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKGDNEEQNVGIALLRRAVESPLRQIVANAGDEPSVVVDK-VKQGSGNYGFNAATGVYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAEIVED 527          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 6.510e-57
Identity = 118/244 (48.36%), Postives = 161/244 (65.98%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +I+EE+G  LE   L+ LG   ++ + K++T I+ G GDK ++E R ++I++ IE +TS+YDKEKLQERLAKL+GGVAV+K+G A+E E+ EKKDRV DAL ATKAAVEEGIV GGG                  D+KIG +II  A+K P+  I              +   +N + G++AA GEYVDM ++GI+DP KV R AL +A SV+SL+ TTEA V E+ ++   AP
Sbjct:  291 QDIAILTGGQVISEEVGRTLESATLEDLGQADRIVVDKENTTIVGGKGDKAAVEARIKEIKAQIEQTTSEYDKEKLQERLAKLAGGVAVIKVGAATETEMKEKKDRVDDALAATKAAVEEGIVIGGGTALVRAANKVNLDLCG--DEKIGAEIILRAIKAPLKQIAENAGFDPGVVANNVENAENENTGFNAATGEYVDMFEAGIVDPAKVERVALQNAVSVASLLLTTEATVSEIKEDKPAAP 532          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_MARAV (60 kDa chaperonin OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 6.510e-57
Identity = 118/241 (48.96%), Postives = 164/241 (68.05%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXK 724
            QD+A+LTGG +I+EE+G+ LE   LD LGT K+V ++K++T I+ GAG +  I  R EQIR  IE+S+SDYDKEKLQER+AKL+GGVAV+K+G  SE E+ EKK RV DAL++T+AAVEEGIV GGGV               N +QK GV I++ A++ P+  I             K+ E + +  G++AA  +Y DM++ GI+DP KV R++L  AASV+SL+ TTEA+V + P++ K
Sbjct:  290 QDIAILTGGTVISEEVGLTLENTTLDDLGTAKRVNVTKENTTIIGGAGAEADISARVEQIRKQIEDSSSDYDKEKLQERVAKLAGGVAVIKVGAGSEVEMKEKKARVEDALHSTRAAVEEGIVAGGGVTLIRAIAALDKVDAINDEQKAGVNILRRAMEAPLRQIVFNAGGESSVVVAKVKEGEGS-FGFNAATEQYGDMLEMGILDPAKVTRSSLQAAASVASLIITTEAMVADEPEDDK 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_CAMJD (60 kDa chaperonin OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=groL PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 6.510e-57
Identity = 120/243 (49.38%), Postives = 163/243 (67.08%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A+LTGG++I+EELG  LE   +  LG    V I KD+T +++GAG+K +I+ R  QI++ I  +TSDYD+EKLQERLAKLSGGVAV+K+G A+E E+ EKKDRV DAL+ATKAAVEEGIV GGG                  D+ IG  I++ AL+ P+  I              +    + + G+DAAKGEYV+M++SGIIDP+KV R AL++A SV+S++ TTEA + E+ KE K A
Sbjct:  289 EDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTVVNGAGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQG--DEAIGAAIVERALRAPLRQIAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSVASMLLTTEATISEI-KEDKPA 528          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH602_MOOTA (60 kDa chaperonin 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL2 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 6.510e-57
Identity = 116/244 (47.54%), Postives = 164/244 (67.21%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEAP 733
            QD+A+LTGG +ITEE G+ LE   LDMLG  ++V + K++T I++G G +++IE R  QIR   E STSDYD+EKLQERLAKL+GGVAV+K+G A+E E+ EKK R+ DAL AT+AAVEEGIVPGGG               A  D+  GV+++  AL+ P+  I             K + Q    +G++AA  EYV++ ++GI+DPLKV R+AL +AAS++SL+ TTE+++ ++P+E    P
Sbjct:  288 QDIAILTGGQVITEEAGLKLENTTLDMLGQARQVRVGKEETTIVEGRGKEEAIEARIAQIRREYEESTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKMRIEDALAATRAAVEEGIVPGGGTALVRAQTALDGVQ-AQGDELTGVRLVYRALEEPMRQIAANAGVDGSVVVEK-VRQSGDSMGFNAATREYVNLFEAGIVDPLKVTRSALENAASIASLVLTTESLIADIPEEEPPVP 529          
BLAST of DC900313 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.502e-57
Identity = 124/243 (51.03%), Postives = 157/243 (64.61%), Query Frame = 2
Query:    2 QDLAVLTGGDLITEELGMDLEKVNLDMLGTCKKVTISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVXXXXXXXXXXXXSTANFDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXXKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEXKEA 730
            +D+A LTGG +I+EE+G  LE   +  LG   +V I KD++ I+DG G K  +  R  QIR+ IE +TSDYD+EKLQERLAKLSGGVAV+K+G ASE E+ EKKDRV DAL+ATKAAVEEGIV GGG              +   D+KIG +II+ A+  P+  I              + +  N + G++AA GEYVDM   GIIDPLKV R AL +A SVSSL+ TTEA + E+ KE K A
Sbjct:  290 KDIATLTGGSVISEEIGKTLESATIADLGQAARVVIDKDNSTIVDGKGSKDEVNARVAQIRTQIEATTSDYDREKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAAKVKLELSG--DEKIGYEIIKRAISAPLKQIAQNAGFDAGVVANNVEQNGNENFGFNAANGEYVDMFAEGIIDPLKVARIALQNAVSVSSLLLTTEATISEI-KEDKPA 529          
The following BLAST results are available for this feature:
BLAST of DC900313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_AZOSE4.985e-5749.7960 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN... [more]
CH60_PSEMY6.510e-5748.9460 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]
CH60_PSEAE6.510e-5748.5460 kDa chaperonin OS=Pseudomonas aeruginosa GN=gro... [more]
CH60_PSEAB6.510e-5748.5460 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA86.510e-5748.5460 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_NITSB6.510e-5748.3660 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]
CH60_MARAV6.510e-5748.9660 kDa chaperonin OS=Marinobacter aquaeolei (strai... [more]
CH60_CAMJD6.510e-5749.3860 kDa chaperonin OS=Campylobacter jejuni subsp. d... [more]
CH602_MOOTA6.510e-5747.5460 kDa chaperonin 2 OS=Moorella thermoacetica (str... [more]
CH60_WOLSU8.502e-5751.0360 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]

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Properties
Property NameValue
Genbank descriptionDC900313 VSS Citrus sinensis cDNA clone VS28663 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900313 ID=DC900313; Name=DC900313; organism=Citrus sinensis; type=EST; length=1041bp
GCAGGATCTGGCTGTTCTCACTGGTGGTGATCTGATAACTGAAGAGCTCG
GCATGGACCTTGAGAAAGTGAATCTGGATATGCTCGGCACTTGCAAAAAG
GTTACAATATCGAAGGATGACACTGTCATTCTGGACGGTGCTGGTGATAA
GAAGTCCATTGAAGAAAGATGTGAACAGATTAGGTCTGCGATTGAGAACA
GCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGATTGGCAAAGCTT
TCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCTAGTGAAGCTGAAGT
TGGTGAGAAGAAAGATAGAGTTACTGATGCTTTGAATGCGACAAAGGCAG
CTGTAGAAGAGGGTATTGTGCCGGGTGGTGGTGTTGCCCTTCTATATGCG
GCAAAAGAGTTGGAAAAGCTGTCCACTGCTAACTTTGACCAGAAGATTGG
TGTTCAGATTATTCAGAATGCTCTAAAGACACCAGTGCACACAATTGCTG
CTAATGCAGGAGTTGAGGGGGCTGTTGTGGTTGGTAAGCTATTGGAGCAG
GACAACACTGACCTTGGGTATGATGCCGCCAAAGGTGAGTATGTTGATAT
GGTCAAATCTGGAATTATCGATCCATTGAAAGTAATCAGAACTGCTTTGG
TTGATGCTGCAAGTGTATCATCTTTAATGACCACAACTGAAGCTATTGTT
GTTGAGCTGCCTAAGGAGGANAAGGAAGCTCCGGGAGGCATGGGTGGCAT
GGGCGGAATGGGCGGCATGGACTATTGAAATCCCAGTANAATGCTTAACT
GATTGTCCCTTTTTTTTTTTTTTGGGGTTCCATAATCAACATACAATCTG
AATGTTAGGATTTTGTGGCCAGCTTAATNANAAAAAANTGTGTCAATCAT
AAGGCATCCTTGTAATCATAGTGANAGGTAGGCATTTAGGTCGTTTGGCA
ATTTAGGATAAAACATTGCTGATTTAGGTCGTTTGGCAATCCNCTTGGAT
GATTGGTTGGTTTTTAATTGAACTGGATTTTNTTTCCCATT
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