CX043654

Overview
NameCX043654
Unique NameCX043654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.383e-34
Identity = 81/131 (61.83%), Postives = 91/131 (69.47%), Query Frame = -2
Query:  241 GRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQE 627
            G+GK       S SRS KAGL FPVGRI R L+ G YA RVG+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GKG +    ASQE
Sbjct:    3 GKGKSAGADKASTSRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKGDK----ASQE 129          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 76/118 (64.41%), Postives = 85/118 (72.03%), Query Frame = -2
Query:  274 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 627
            G+GK K TKS +RS +AGLQFPVGR+ RFLK G Y  RVGAGAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K  K
Sbjct:    5 GKGKAKGTKSKTRSSRAGLQFPVGRVHRFLKKGNYGSRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_PHANO (Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.081e-34
Identity = 74/123 (60.16%), Postives = 84/123 (68.29%), Query Frame = -2
Query:  274 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 642
            G   GG+     + + SRS KAGL FPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K  K
Sbjct:    3 GGKSGGKASGSKSSAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAK 125          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_NEUCR (Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.081e-34
Identity = 82/135 (60.74%), Postives = 94/135 (69.63%), Query Frame = -2
Query:  241 TKGGR--GKPKSTKSI-SRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQE 636
            T GG+  GK   +K+  SRS KAGL FPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GK  ++   ASQE
Sbjct:    2 TGGGKSGGKASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTGKN---ASQE 133          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_KLULA (Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 77/133 (57.89%), Postives = 90/133 (67.67%), Query Frame = -2
Query:  241 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQE 639
            S KGG+    +  S SRS KAGL FPVGR+ R L+ G YA R+G+GAP                 AGNAARDNKK RI+PRH+QLA+RND+EL+KLLG VTIA GGVLPNIHQNLLP+K  K +     ASQE
Sbjct:    2 SGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSSKAK-----ASQE 129          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 79/134 (58.96%), Postives = 91/134 (67.91%), Query Frame = -2
Query:  238 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQEF 639
            S KG  G+ K++K  S S KAGLQFPVGRI R+LK GKYA RVGAGAP                 AGNAARDNKK+RI PRHIQLAVRNDEEL+K L  VT A+GGVLPNIH  LLP+   K +   G A+Q++
Sbjct:    2 SAKGKTGRKKASKGTSNSAKAGLQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPK---KSQLKAGTANQDY 132          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_MAGGR (Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 78/124 (62.90%), Postives = 88/124 (70.97%), Query Frame = -2
Query:  274 TKGGR--GKPKSTKSI-SRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 636
            T GG+  GK   +K+  SRS KAGL FPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GK
Sbjct:    2 TGGGKSGGKASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGK 125          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_GIBZE (Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 78/124 (62.90%), Postives = 88/124 (70.97%), Query Frame = -2
Query:  274 TKGGR--GKPKSTKSI-SRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 636
            T GG+  GK   +K+  SRS KAGL FPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GK
Sbjct:    2 TGGGKSGGKASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGK 125          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_CHAGB (Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 78/124 (62.90%), Postives = 88/124 (70.97%), Query Frame = -2
Query:  274 TKGGR--GKPKSTKSI-SRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 636
            T GG+  GK   +K+  SRS KAGL FPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQNLLP+K GK
Sbjct:    2 TGGGKSGGKASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGK 125          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A2_CANAL (Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 79/132 (59.85%), Postives = 92/132 (69.70%), Query Frame = -2
Query:  241 GGRGKPKSTK--SISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGFASQE 630
            GG+GK  S++  S SRS KAGL FPVGR+ R L+ G YA R+G+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K  K     G ASQE
Sbjct:    3 GGKGKAGSSEKASTSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQSLLPAKKAKA----GAASQE 130          
The following BLAST results are available for this feature:
BLAST of CX043654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A2_PICGU1.383e-3461.83Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A1_PSAMI1.806e-3464.41Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]
H2A_PHANO3.081e-3460.16Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 ... [more]
H2A_NEUCR3.081e-3460.74Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3[more]
H2A_KLULA4.024e-3457.89Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 S... [more]
H2A_PLAFA5.256e-3458.96Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]
H2A_MAGGR5.256e-3462.90Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=... [more]
H2A_GIBZE5.256e-3462.90Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3[more]
H2A_CHAGB5.256e-3462.90Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV... [more]
H2A2_CANAL5.256e-3459.85Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12F01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F01-K2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043654 ID=CX043654; Name=CX043654; organism=Citrus sinensis; type=EST; length=688bp
CTTTTTTTTTTTTTTTTAATGCAAACCAACTTCATTGTTGCTAACTTTAA
ACCCCCACACAATGAGATGGGACATCAAAAAATTATTGTTTCACTATATT
CGGCCGGAACCCAAATCCCAGTTTACACGGAGATAAAAGGATCACAAATA
AAGAAAAAAATTGCGTAAATCAATCAATCCTGCATTTTTTTTTTTTTTAA
GTATTCAAATTCAACAAGCAAAGAAGTTTCAGCACTAAAATTCTTGCGAA
GCAAATCCAATATCCTCCCTTCCTTTGCCCATTTTCCTTGGCAACAGGTT
CTGATGAATGTTTGGCAAAACTCCTCCATTTGCAATAGTAACTGTGCCCA
AAAGCTTGCTTAATTCTTCATCATTCCTCACAGCTAGTTGAATGTGCCTT
GGAACGATACGGTTCTTTTTGTTATCCCTTGCAGCATTGCCAGCAAGCTC
CAAAACCTCAGCAGCAAGGTATTCAAGAACAGCCGATAGGTAGACGGGGG
CGCCGGCACCCACGCGATCGGCGTACTTTCCGGCTTTGAGGAAGCGAGCA
ATACGGCCGACGGGGAACTGAAGGCCAGCCTTGTGAGATCTGGAAATTGA
TTTGGTCGACTTGGGCTTGCCTCTGCCGCCCTTCGTTGATCCTGCGGAGC
TCATCGATTGACAAAATAATGCAAATGCTCTCTTGCCT
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