CX043654

Overview
NameCX043654
Unique NameCX043654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 74/123 (60.16%), Postives = 83/123 (67.48%), Query Frame = -2
Query:  274 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 642
            G   GG+    S  S SRS KAGL FPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQNLLP+K  K
Sbjct:    3 GGKSGGKASG-SKSSQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPK 124          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 76/133 (57.14%), Postives = 89/133 (66.92%), Query Frame = -2
Query:  256 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIG 654
            MS  G T GG+ + K+    +RS +AGLQFPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K G+     G
Sbjct:    1 MSGRGKT-GGKARAKAK---TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASSG 129          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 75/132 (56.82%), Postives = 89/132 (67.42%), Query Frame = -2
Query:  265 QSMSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGRE 660
            ++   AG  KGG  K    KS+++S KAGLQFPVGRI R+LK G+YA RVG+GAP                 AGNAARDNKK+RI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP+K     E
Sbjct:    5 KTTKGAGGRKGGPRK----KSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKSAVAEE 132          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = -2
Query:  268 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 645
            +G  KGG+ K KS    SRS +AGLQFPVGRI R L+ G YA+R+GAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLP+K  K +
Sbjct:    2 SGRGKGGKAKGKSK---SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 74/126 (58.73%), Postives = 87/126 (69.05%), Query Frame = -2
Query:  283 QSMSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 660
            ++   AG  KGG  + KS   ++RS +AGLQFPVGRI R+LK G+YA RVG GAP                 AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP+K
Sbjct:    6 KTKKGAGGRKGGGPRKKS---VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = -2
Query:  274 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 639
            S +G  GK + TK+ +RS +AGLQFPVGR+ RFL+ G YA RVG GAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K  K
Sbjct:    2 SGRGKSGKAR-TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = -2
Query:  274 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 639
            S +G  GK + TK+ +RS +AGLQFPVGR+ RFL+ G YA RVG GAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLP+K  K
Sbjct:    2 SGRGKSGKAR-TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 75/134 (55.97%), Postives = 90/134 (67.16%), Query Frame = -2
Query:  283 MSSAGSTKGGR----------GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 654
            M +AG+  GG+          G P+  K++SRS KAGLQFPVGRI R+LK G+YA R+G GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLP+K
Sbjct:    1 MDAAGAGAGGKLKKGAAGRKAGGPRK-KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 75/134 (55.97%), Postives = 90/134 (67.16%), Query Frame = -2
Query:  283 MSSAGSTKGGR----------GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 654
            M +AG+  GG+          G P+  K++SRS KAGLQFPVGRI R+LK G+YA R+G GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLP+K
Sbjct:    1 MDAAGAGAGGKLKKGAAGRKAGGPRK-KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133          
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.096e-31
Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = -2
Query:  268 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 645
            +G  KGG+ K KS    +RS +AGLQFPVGRI R L+ G YA+RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLP+K  K +
Sbjct:    2 SGRGKGGKAKGKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124          
The following BLAST results are available for this feature:
BLAST of CX043654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_COCIM4.919e-3260.16Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S... [more]
H2AX_DANRE4.919e-3257.14Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2A1_SOLLC4.919e-3256.82Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A_SIPNU6.425e-3258.73Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A2_MEDTR6.425e-3258.73Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A_STRPU8.391e-3260.66Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2AE_PSAMI8.391e-3260.66Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A5_ORYSJ8.391e-3255.97Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI8.391e-3255.97Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A_PLADU1.096e-3158.73Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12F01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F01-K2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043654 ID=CX043654; Name=CX043654; organism=Citrus sinensis; type=EST; length=688bp
CTTTTTTTTTTTTTTTTAATGCAAACCAACTTCATTGTTGCTAACTTTAA
ACCCCCACACAATGAGATGGGACATCAAAAAATTATTGTTTCACTATATT
CGGCCGGAACCCAAATCCCAGTTTACACGGAGATAAAAGGATCACAAATA
AAGAAAAAAATTGCGTAAATCAATCAATCCTGCATTTTTTTTTTTTTTAA
GTATTCAAATTCAACAAGCAAAGAAGTTTCAGCACTAAAATTCTTGCGAA
GCAAATCCAATATCCTCCCTTCCTTTGCCCATTTTCCTTGGCAACAGGTT
CTGATGAATGTTTGGCAAAACTCCTCCATTTGCAATAGTAACTGTGCCCA
AAAGCTTGCTTAATTCTTCATCATTCCTCACAGCTAGTTGAATGTGCCTT
GGAACGATACGGTTCTTTTTGTTATCCCTTGCAGCATTGCCAGCAAGCTC
CAAAACCTCAGCAGCAAGGTATTCAAGAACAGCCGATAGGTAGACGGGGG
CGCCGGCACCCACGCGATCGGCGTACTTTCCGGCTTTGAGGAAGCGAGCA
ATACGGCCGACGGGGAACTGAAGGCCAGCCTTGTGAGATCTGGAAATTGA
TTTGGTCGACTTGGGCTTGCCTCTGCCGCCCTTCGTTGATCCTGCGGAGC
TCATCGATTGACAAAATAATGCAAATGCTCTCTTGCCT
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