CX043654
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32 Identity = 74/123 (60.16%), Postives = 83/123 (67.48%), Query Frame = -2 Query: 274 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 642 G GG+ S S SRS KAGL FPVGR+ R L+ G YA RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQNLLP+K K Sbjct: 3 GGKSGGKASG-SKSSQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPK 124
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3) HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32 Identity = 76/133 (57.14%), Postives = 89/133 (66.92%), Query Frame = -2 Query: 256 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIG 654 MS G T GG+ + K+ +RS +AGLQFPVGR+ R L+ G YA+RVGAGAP AGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLP+K G+ G Sbjct: 1 MSGRGKT-GGKARAKAK---TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASSG 129
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32 Identity = 75/132 (56.82%), Postives = 89/132 (67.42%), Query Frame = -2 Query: 265 QSMSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGRE 660 ++ AG KGG K KS+++S KAGLQFPVGRI R+LK G+YA RVG+GAP AGNAARDNKK+RI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLP+K E Sbjct: 5 KTTKGAGGRKGGPRK----KSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKSAVAEE 132
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32 Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = -2 Query: 268 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 645 +G KGG+ K KS SRS +AGLQFPVGRI R L+ G YA+R+GAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLP+K K + Sbjct: 2 SGRGKGGKAKGKSK---SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32 Identity = 74/126 (58.73%), Postives = 87/126 (69.05%), Query Frame = -2 Query: 283 QSMSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 660 ++ AG KGG + KS ++RS +AGLQFPVGRI R+LK G+YA RVG GAP AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLP+K Sbjct: 6 KTKKGAGGRKGGGPRKKS---VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32 Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = -2 Query: 274 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 639 S +G GK + TK+ +RS +AGLQFPVGR+ RFL+ G YA RVG GAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLP+K K Sbjct: 2 SGRGKSGKAR-TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32 Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = -2 Query: 274 STKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGK 639 S +G GK + TK+ +RS +AGLQFPVGR+ RFL+ G YA RVG GAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLP+K K Sbjct: 2 SGRGKSGKAR-TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32 Identity = 75/134 (55.97%), Postives = 90/134 (67.16%), Query Frame = -2 Query: 283 MSSAGSTKGGR----------GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 654 M +AG+ GG+ G P+ K++SRS KAGLQFPVGRI R+LK G+YA R+G GAP AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLP+K Sbjct: 1 MDAAGAGAGGKLKKGAAGRKAGGPRK-KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32 Identity = 75/134 (55.97%), Postives = 90/134 (67.16%), Query Frame = -2 Query: 283 MSSAGSTKGGR----------GKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRK 654 M +AG+ GG+ G P+ K++SRS KAGLQFPVGRI R+LK G+YA R+G GAP AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLP+K Sbjct: 1 MDAAGAGAGGKLKKGAAGRKAGGPRK-KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133
BLAST of CX043654 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.096e-31 Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = -2 Query: 268 AGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGR 645 +G KGG+ K KS +RS +AGLQFPVGRI R L+ G YA+RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLP+K K + Sbjct: 2 SGRGKGGKAKGKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124 The following BLAST results are available for this feature:
BLAST of CX043654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043654 ID=CX043654; Name=CX043654; organism=Citrus sinensis; type=EST; length=688bpback to top |