CX043653

Overview
NameCX043653
Unique NameCX043653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3591 contig Csv1_Contig3591:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043653 vs. ExPASy Swiss-Prot
Match: AAKG2_HUMAN (5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.194e-11
Identity = 66/262 (25.19%), Postives = 115/262 (43.89%), Query Frame = 2
Query:    8 KARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIV 790
            K  FVG+L+ +DFI IL     + S + +  ELE H I  W+E   YL            +PLV   P+ +L D    ++ N++  +P+I   S +      L+I +   ILK + + F         +K  +  + +GT+           +A + P                 ++P+VD++  ++DIY + D+  LA +K Y   N  ++T+ QALQ     +       +    C   + L  +++R+    V RLV+V
Sbjct:  311 KQSFVGMLTITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFL-QLFMSDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTY---NNLDITVTQALQHRSQYF-------EGVVKCNKLEILETIVDRIVRAEVHRLVVV 535          
BLAST of CX043653 vs. ExPASy Swiss-Prot
Match: PRKAG_DICDI (5'-AMP-activated protein kinase subunit gamma OS=Dictyostelium discoideum GN=prkag PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.888e-11
Identity = 66/269 (24.54%), Postives = 119/269 (44.24%), Query Frame = 2
Query:   17 FVGVLSASDFI-LILRELGNHGSNLTEEELETHTISA-WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDS-LLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 814
            F G+++ SDFI ++L       SN   +++  H I   W+E                P  L+   P  NL D A  +L  ++  +P++     +     +LHI + S IL  + + F      L  L +PI ++ +GT+   +      PL  +                   ++PI+D   S ++D+Y +SD+T ++K    +  +L+ + +HQ L     +++    R ++   C   D L  V+ER     V RLV +++ SK+VE
Sbjct:  320 FTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVER-----------PSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNS----ILHILTHSRILAFMMKSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTPLVEV---------LELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVL----STFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVE 556          
BLAST of CX043653 vs. ExPASy Swiss-Prot
Match: AAKG2_PONAB (5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.888e-11
Identity = 65/261 (24.90%), Postives = 114/261 (43.68%), Query Frame = 2
Query:    8 KARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 787
            K  FVG+L+ +DFI IL     + S + +  ELE H I  W+E   YL            +PLV   P+ +L D    ++ N++  +P+I   S +      L+I +   ILK + + F         +K  +  + +GT+           +A + P                 ++P+VD++  ++DIY + D+  LA +K Y   N  ++T+ QALQ     +       +    C   + L  +++R+    V RLV+
Sbjct:  266 KQSFVGMLTITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLLDAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFL-QLFMSDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTY---NNLDITVTQALQHRSQYF-------EGVVKCNKLEILETIVDRIVRAEVHRLVV 489          
The following BLAST results are available for this feature:
BLAST of CX043653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AAKG2_HUMAN2.194e-1125.195'-AMP-activated protein kinase subunit gamma-2 OS... [more]
PRKAG_DICDI4.888e-1124.545'-AMP-activated protein kinase subunit gamma OS=D... [more]
AAKG2_PONAB4.888e-1124.905'-AMP-activated protein kinase subunit gamma-2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12E12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12E12-I24-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043653 ID=CX043653; Name=CX043653; organism=Citrus sinensis; type=EST; length=815bp
CTTCAGCAAGGCGCGGTTTGTTGGAGTTCTTAGTGCGTCAGATTTTATAT
TGATTTTAAGAGAGCTTGGAAATCATGGCTCAAATCTCACAGAGGAAGAG
CTTGAAACACACACCATATCTGCCTGGAAAGAGGGGAAAGCGTATTTGAA
CAGACAAATCGATAGTCATGGGAAAGCATTTCCAAGACCTCTTGTTTATG
CGGGGCCGAATGATAACTTGAAGGATGTAGCGCGAAAGATTTTGCATAAT
GAGGTGGCTACAGTTCCCATCATCCATTCATCTTCACAGGACGGTTCATT
TCCTCAGCTACTACATATTGCATCCCTTTCTGGAATTCTAAAATGTGTTT
GCAGGTATTTTAGGCATTGTTCTAGCTCGTTGCCCATTCTAAAGTTACCA
ATTTGTGCAATTCCTGTGGGTACTTGGGTTCCAAAGATTGGAGAGCCTAA
TCGACGACCATTGGCAATGTTGAGACCTAGTGCTTCTCTTAGTGCTGCAT
TAAATTTGTTAGTCCAAGCTCAAGTAAGTTCGATACCCATAGTTGATGAC
AACGACTCATTACTTGATATCTACTGTCGGAGTGATATTACGGCTTTGGC
AAAGGACAAAGCTTATGCGCACATTAATCTCAGTGAAATGACCATTCATC
AGGCATTGCAATTGGGACAAGATTCATATTCTCCTTATGAGTTGAGAAGT
CAAAGATGTCAGATGTGTTTGCCGTCAGATACATTGCATAAAGTGATGGA
GCGGTTGGCAAACCCAGGGGTTCGACGGCTTGTTATCGTGGAGGCTGGCA
GCAAGCGTGTAGAGG
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