DC900308

Overview
NameDC900308
Unique NameDC900308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_NEIMF (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  287 AKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_NEIMB (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup B GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  287 AKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLIALVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_NEIMA (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup A GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  287 AKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_NEIM0 (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup C (strain 053442) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA +C +QVSYAIGV EP S+ +D++GTGKI +++++ +V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  287 AKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLVREHFDLRPKGIVQMLDLLR---PIYSKSAAYGHFGREEPEFTWE 375
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURTA (S-adenosylmethionine synthetase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURPS (S-adenosylmethionine synthetase OS=Burkholderia pseudomallei GN=metK PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURPP (S-adenosylmethionine synthetase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC++QVSYAIGV +P SV V+++GTG++ D  I ++V+E FD RP  +   LDL R     + K+AAYGHFGR++P+FTWE
Sbjct:  286 AKNIVAAGLASRCLIQVSYAIGVAQPTSVMVNTFGTGRVSDATITRLVQEHFDLRPKGIIQMLDLLR---PIYEKSAAYGHFGREEPEFTWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURP6 (S-adenosylmethionine synthetase OS=Burkholderia pseudomallei (strain 668) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURP1 (S-adenosylmethionine synthetase OS=Burkholderia pseudomallei (strain 1710b) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURP0 (S-adenosylmethionine synthetase OS=Burkholderia pseudomallei (strain 1106a) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
The following BLAST results are available for this feature:
BLAST of DC900308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_NEIMF5.560e-2254.35S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIMB5.560e-2254.35S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIMA5.560e-2254.35S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIM05.560e-2254.35S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_BURTA5.560e-2256.52S-adenosylmethionine synthetase OS=Burkholderia th... [more]
METK_BURPS5.560e-2256.52S-adenosylmethionine synthetase OS=Burkholderia ps... [more]
METK_BURPP5.560e-2255.43S-adenosylmethionine synthetase OS=Burkholderia ph... [more]
METK_BURP65.560e-2256.52S-adenosylmethionine synthetase OS=Burkholderia ps... [more]
METK_BURP15.560e-2256.52S-adenosylmethionine synthetase OS=Burkholderia ps... [more]
METK_BURP05.560e-2256.52S-adenosylmethionine synthetase OS=Burkholderia ps... [more]

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Properties
Property NameValue
Genbank descriptionDC900308 VSS Citrus sinensis cDNA clone VS28659 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900308 ID=DC900308; Name=DC900308; organism=Citrus sinensis; type=EST; length=662bp
GCTGGAGCCATGTGCGGGCTTCTCTGAAAGACCTACTAGTGAAGAGTGTG
CATCATGTAGCAGCTGCTAAGAGCATTGTTGCAAACGGGCTTGCTCGCAG
GTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCTG
TTTTTGTGGACTCATATGGAACCGGCAAGATTCCTGACAAGGAGATCCTC
AAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGGAATGATGACCATCAA
TTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCCT
ATGGACATTTTGGCAGGGATGACCCAGACTTCACTTGGGAAGTTGTGAAG
CCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAAA
ACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGATGAATAATTT
GAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATCTCCTGTGTTC
AGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTCTTCTTTCCCC
ACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCACTGTTGTGTAG
TGATATNGATTGAGAATTTTGCTCAACTGGTGCCTGGAATTAGTAAAATT
CTTCCTTTTGCT
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