DC900308

Overview
NameDC900308
Unique NameDC900308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURS3 (S-adenosylmethionine synthetase OS=Burkholderia sp. (strain 383) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURCM (S-adenosylmethionine synthetase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURCJ (S-adenosylmethionine synthetase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURCH (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain HI2424) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURCC (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain MC0-3) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURCA (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain AU 1054) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_BURA4 (S-adenosylmethionine synthetase OS=Burkholderia ambifaria (strain MC40-6) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R ++QVSYAIGV EP SV V+++GTG++ D  I K+V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDAVITKLVREHFDLRPKGIIKMLDLLR---PIYEKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_SYNFM (S-adenosylmethionine synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=metK PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.113e-21
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE---VVKPLK 359
            AK+IVA G+A +  VQV+Y+IGV EP+S+ +D++GTGKIP   I +IV++ F F+P  M   L L R     F KTA YGHFGR+DPDFTWE   +V+P++
Sbjct:  287 AKNIVAAGVADKVEVQVAYSIGVAEPVSLMIDTFGTGKIPSDRIAEIVRKLFSFKPANMIKQLRLLR---PIFKKTACYGHFGRNDPDFTWEKTDMVEPIR 384
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_POLNS (S-adenosylmethionine synthetase OS=Polynucleobacter necessarius (strain STIR1) GN=metK PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.113e-21
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK++VA GLA +C++Q+SYAIGV +P SV V ++GTGKI D++I ++V E FD RP  +   L+L R     + KTAAYGHFGR++P+F+WE
Sbjct:  286 AKNVVAAGLASKCLIQISYAIGVAKPTSVMVSAFGTGKIVDEKIAQLVSEHFDLRPKGIVKMLNLLR---PIYKKTAAYGHFGREEPEFSWE 374
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_POLNA (S-adenosylmethionine synthetase OS=Polaromonas naphthalenivorans (strain CJ2) GN=metK PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.113e-21
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLAR+C +QV+YAIGV +P++V V + GTG IPD+++  +V+E FD RP  +   LDL R     + KTAAYGHFGRD+P+FTWE
Sbjct:  293 AKNIVAAGLARQCQIQVAYAIGVAKPMNVTVYTEGTGVIPDEKLSALVQEHFDLRPNGIIQMLDLLR---PIYEKTAAYGHFGRDEPEFTWE 381
The following BLAST results are available for this feature:
BLAST of DC900308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BURS31.239e-2156.52S-adenosylmethionine synthetase OS=Burkholderia sp... [more]
METK_BURCM1.239e-2156.52S-adenosylmethionine synthetase OS=Burkholderia am... [more]
METK_BURCJ1.239e-2156.52S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCH1.239e-2156.52S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCC1.239e-2156.52S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCA1.239e-2156.52S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURA41.239e-2156.52S-adenosylmethionine synthetase OS=Burkholderia am... [more]
METK_SYNFM2.113e-2152.48S-adenosylmethionine synthetase OS=Syntrophobacter... [more]
METK_POLNS2.113e-2153.26S-adenosylmethionine synthetase OS=Polynucleobacte... [more]
METK_POLNA2.113e-2156.52S-adenosylmethionine synthetase OS=Polaromonas nap... [more]

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Properties
Property NameValue
Genbank descriptionDC900308 VSS Citrus sinensis cDNA clone VS28659 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900308 ID=DC900308; Name=DC900308; organism=Citrus sinensis; type=EST; length=662bp
GCTGGAGCCATGTGCGGGCTTCTCTGAAAGACCTACTAGTGAAGAGTGTG
CATCATGTAGCAGCTGCTAAGAGCATTGTTGCAAACGGGCTTGCTCGCAG
GTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCTG
TTTTTGTGGACTCATATGGAACCGGCAAGATTCCTGACAAGGAGATCCTC
AAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGGAATGATGACCATCAA
TTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCCT
ATGGACATTTTGGCAGGGATGACCCAGACTTCACTTGGGAAGTTGTGAAG
CCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAAA
ACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGATGAATAATTT
GAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATCTCCTGTGTTC
AGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTCTTCTTTCCCC
ACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCACTGTTGTGTAG
TGATATNGATTGAGAATTTTGCTCAACTGGTGCCTGGAATTAGTAAAATT
CTTCCTTTTGCT
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