DC900308

Overview
NameDC900308
Unique NameDC900308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_RALEJ (S-adenosylmethionine synthetase OS=Ralstonia eutropha (strain JMP134) GN=metK PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.028e-21
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK++VA GLAR+C VQVSYAIGV  P++V V + GTGKI D +I ++V+E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  285 AKNVVAAGLARQCQVQVSYAIGVARPINVTVYTEGTGKISDAKIAELVQEHFDLRPKGIVQMLDLLR---PIYEKTAAYGHFGREEPEFSWE 373          
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_NITOC (S-adenosylmethionine synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=metK PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.028e-21
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 3
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK++VA GLA RC VQ+SYAIGV EP SV V+++GTG+I +  ++++++  FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  286 AKNLVAAGLAERCEVQISYAIGVAEPTSVSVNTFGTGRIAESRLVELIQAHFDLRPVGLLQMLDLIR---PIYRKTAAYGHFGREEPEFTWE 374          
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_MYXXD (S-adenosylmethionine synthetase OS=Myxococcus xanthus (strain DK 1622) GN=metK PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.028e-21
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 359
            AK++VA GLARRC VQVSYAIGV EP+SV V+++GT  +P++ I   V+++F  RP  +T  L+L R     + KTAAYGHFGR + +FTWE V+  K
Sbjct:  281 AKTVVAAGLARRCEVQVSYAIGVAEPVSVMVETFGTATVPEERIALAVRKTFGLRPREITEYLNLLR---PIYQKTAAYGHFGRTEKEFTWERVEEKK 375          
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_MYXXA (S-adenosylmethionine synthetase OS=Myxococcus xanthus GN=metK PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.028e-21
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 359
            AK++VA GLARRC VQVSYAIGV EP+SV V+++GT  +P++ I   V+++F  RP  +T  L+L R     + KTAAYGHFGR + +FTWE V+  K
Sbjct:  281 AKTVVAAGLARRCEVQVSYAIGVAEPVSVMVETFGTATVPEERIALAVRKTFGLRPREITEYLNLLR---PIYQKTAAYGHFGRTEKEFTWERVEEKK 375          
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_RHOFD (S-adenosylmethionine synthetase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=metK PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 3
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLAR+C +QV+YAIGV +P++V V + GTG IPD +I ++V E FD RP  +   LDL R     + KTAAYGHFGR++P+FTWE
Sbjct:  291 AKNIVAAGLARQCQIQVAYAIGVAKPMNVTVYTEGTGVIPDDKIAELVHELFDLRPKGIIQMLDLLR---PIYEKTAAYGHFGREEPEFTWE 379          
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_MARMS (S-adenosylmethionine synthetase OS=Marinomonas sp. (strain MWYL1) GN=metK PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 3
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA +C +Q+SYAIGV EP S+ ++++GTGK+ D  I ++V+E F+ RP  +   LDLKR     +L TAAYGHFGR+  +FTWE
Sbjct:  285 AKNIVAAGLADKCEIQISYAIGVAEPTSISINTFGTGKVSDAVISQLVREHFELRPAGLIKMLDLKR---PIYLPTAAYGHFGREGENFTWE 373          
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_JANMA (S-adenosylmethionine synthetase OS=Janthinobacterium sp. (strain Marseille) GN=metK PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 3
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA R  +Q+SYAIGV +P SV V ++GTGKI D++I ++V E FD RP  +   LDL R     + KTAAYGHFGR++P+F+WE
Sbjct:  285 AKNIVAAGLAERAQIQISYAIGVAKPTSVMVTTFGTGKISDEKIAQLVLEHFDLRPKGIVQMLDLLR---PIYQKTAAYGHFGREEPEFSWE 373          
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_FRASN (S-adenosylmethionine synthetase OS=Frankia sp. (strain EAN1pec) GN=metK PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.369e-20
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 3
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK++VA GLA RC VQV+YAIG   P+ +FV+++GTGK+PD +I   V + FD RP  +  +LDL R     + +TAAYGHFGR + DFTWE
Sbjct:  296 AKNVVAAGLASRCEVQVAYAIGKAHPVGLFVETFGTGKVPDAQIQDAVTQVFDLRPAAIVRDLDLLR---PIYAQTAAYGHFGRPELDFTWE 384          
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.369e-20
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 3
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK++VA G+A +  VQV+YAIGV +P+S+ VD++GTGKI D+EI+ I+ + FD RPG +  +LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  291 AKNLVAAGIADKLEVQVAYAIGVAKPVSIIVDTFGTGKISDEEIVNIINKVFDLRPGAIIRDLDLRR---PIYRQTAAYGHFGRTDLDLPWE 379          
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.369e-20
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 3
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK++VA G+A +  VQV+YAIGV +P+S+ VD++GTGKI D+EI+ I+ + FD RPG +  +LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  291 AKNLVAAGIADKLEVQVAYAIGVAKPVSIIVDTFGTGKISDEEIVNIINKVFDLRPGAIIRDLDLRR---PIYRQTAAYGHFGRTDLDLPWE 379          
The following BLAST results are available for this feature:
BLAST of DC900308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_RALEJ8.028e-2156.52S-adenosylmethionine synthetase OS=Ralstonia eutro... [more]
METK_NITOC8.028e-2153.26S-adenosylmethionine synthetase OS=Nitrosococcus o... [more]
METK_MYXXD8.028e-2153.06S-adenosylmethionine synthetase OS=Myxococcus xant... [more]
METK_MYXXA8.028e-2153.06S-adenosylmethionine synthetase OS=Myxococcus xant... [more]
METK_RHOFD1.048e-2056.52S-adenosylmethionine synthetase OS=Rhodoferax ferr... [more]
METK_MARMS1.048e-2053.26S-adenosylmethionine synthetase OS=Marinomonas sp.... [more]
METK_JANMA1.048e-2055.43S-adenosylmethionine synthetase OS=Janthinobacteri... [more]
METK_FRASN1.369e-2053.26S-adenosylmethionine synthetase OS=Frankia sp. (st... [more]
METK_CLOPS1.369e-2053.26S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP11.369e-2053.26S-adenosylmethionine synthetase OS=Clostridium per... [more]

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Properties
Property NameValue
Genbank descriptionDC900308 VSS Citrus sinensis cDNA clone VS28659 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900308 ID=DC900308; Name=DC900308; organism=Citrus sinensis; type=EST; length=662bp
GCTGGAGCCATGTGCGGGCTTCTCTGAAAGACCTACTAGTGAAGAGTGTG
CATCATGTAGCAGCTGCTAAGAGCATTGTTGCAAACGGGCTTGCTCGCAG
GTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCTG
TTTTTGTGGACTCATATGGAACCGGCAAGATTCCTGACAAGGAGATCCTC
AAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGGAATGATGACCATCAA
TTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCCT
ATGGACATTTTGGCAGGGATGACCCAGACTTCACTTGGGAAGTTGTGAAG
CCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAAA
ACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGATGAATAATTT
GAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATCTCCTGTGTTC
AGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTCTTCTTTCCCC
ACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCACTGTTGTGTAG
TGATATNGATTGAGAATTTTGCTCAACTGGTGCCTGGAATTAGTAAAATT
CTTCCTTTTGCT
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