DC900308

Overview
NameDC900308
Unique NameDC900308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_SHIFL (S-adenosylmethionine synthetase OS=Shigella flexneri GN=metK PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_SHIF8 (S-adenosylmethionine synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=metK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_SHIDS (S-adenosylmethionine synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=metK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_SHIBS (S-adenosylmethionine synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=metK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_SHIB3 (S-adenosylmethionine synthetase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=metK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_PROMA (S-adenosylmethionine synthetase OS=Prochlorococcus marinus GN=metK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGN---GRFLK-TAAYGHFGRDDPDFTWEVVK 350
            AKS+VA GLA R  VQ+SYAIGV  P+S+ V+++G+GK+ ++ + ++V E+FD RPG +     L+   N   GRF +  AAYGHFGR D +  WE V+
Sbjct:  301 AKSLVAAGLASRVEVQLSYAIGVANPVSILVEAFGSGKMSNEALTELVTENFDLRPGAIIEQFGLRSLPNQRQGRFYRDVAAYGHFGRPDLNLPWEDVQ 399
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_LEUMM (S-adenosylmethionine synthetase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=metK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 46/98 (46.94%), Postives = 69/98 (70.41%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 359
            AK++VA G+A +  +QVSYAIGV  P+S+ VDS+GT K+ +++I +I+ + FDFRP  +  NL+L+R     + +TAA+GHFGR D D  WE +  +K
Sbjct:  285 AKNMVAAGVADKLELQVSYAIGVARPVSLNVDSFGTAKVSEEKINEIITKLFDFRPLAIINNLNLRR---PIYKQTAAFGHFGRTDIDLPWESLDKVK 379
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_KLEP7 (S-adenosylmethionine synthetase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=metK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_KLEP3 (S-adenosylmethionine synthetase OS=Klebsiella pneumoniae (strain 342) GN=metK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
[Close]
BLAST of DC900308 vs. ExPASy Swiss-Prot
Match: METK_ESCF3 (S-adenosylmethionine synthetase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=metK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   66 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 341
            AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  283 AKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369
The following BLAST results are available for this feature:
BLAST of DC900308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SHIFL3.157e-1751.09S-adenosylmethionine synthetase OS=Shigella flexne... [more]
METK_SHIF83.157e-1751.09S-adenosylmethionine synthetase OS=Shigella flexne... [more]
METK_SHIDS3.157e-1751.09S-adenosylmethionine synthetase OS=Shigella dysent... [more]
METK_SHIBS3.157e-1751.09S-adenosylmethionine synthetase OS=Shigella boydii... [more]
METK_SHIB33.157e-1751.09S-adenosylmethionine synthetase OS=Shigella boydii... [more]
METK_PROMA3.157e-1747.47S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_LEUMM3.157e-1746.94S-adenosylmethionine synthetase OS=Leuconostoc mes... [more]
METK_KLEP73.157e-1751.09S-adenosylmethionine synthetase OS=Klebsiella pneu... [more]
METK_KLEP33.157e-1751.09S-adenosylmethionine synthetase OS=Klebsiella pneu... [more]
METK_ESCF33.157e-1751.09S-adenosylmethionine synthetase OS=Escherichia fer... [more]

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Properties
Property NameValue
Genbank descriptionDC900308 VSS Citrus sinensis cDNA clone VS28659 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900308 ID=DC900308; Name=DC900308; organism=Citrus sinensis; type=EST; length=662bp
GCTGGAGCCATGTGCGGGCTTCTCTGAAAGACCTACTAGTGAAGAGTGTG
CATCATGTAGCAGCTGCTAAGAGCATTGTTGCAAACGGGCTTGCTCGCAG
GTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCTG
TTTTTGTGGACTCATATGGAACCGGCAAGATTCCTGACAAGGAGATCCTC
AAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGGAATGATGACCATCAA
TTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCCT
ATGGACATTTTGGCAGGGATGACCCAGACTTCACTTGGGAAGTTGTGAAG
CCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAAA
ACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGATGAATAATTT
GAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATCTCCTGTGTTC
AGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTCTTCTTTCCCC
ACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCACTGTTGTGTAG
TGATATNGATTGAGAATTTTGCTCAACTGGTGCCTGGAATTAGTAAAATT
CTTCCTTTTGCT
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