DC900307

Overview
NameDC900307
Unique NameDC900307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:162..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_CLOBL (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=metK PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.171e-52
Identity = 104/180 (57.78%), Postives = 126/180 (70.00%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTK------RPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYN 620
            LFTSESV EGHPDK+CDQISDAVLDA L++DP  +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+     G D + C V+ +I++QS DIA GV            R + +GAGDQG MFG+AT+ET E+MP+   +A KL  RL+EVRKN T  +LRPDGKTQVT EY N
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDRLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYEN 183          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_CLOBA (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=metK PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.171e-52
Identity = 103/181 (56.91%), Postives = 125/181 (69.06%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYND 623
            LFTSESV EGHPDK+CDQISDA+LDA L +D  ++VACETCT T +VMV GEI+T   VD  K+VR+T R IG+     G D D C V+  I++QS DIA GV      +       E +GAGDQG MFG+AT+ET  +MPL   +A KL  RLTEVRK+ T  +LRPDGKTQVT EY N+
Sbjct:    4 LFTSESVTEGHPDKMCDQISDAILDAILAKDSNARVACETCTTTGLVMVMGEISTNCYVDIPKVVRETVREIGYDRAKYGFDCDTCSVMTTIDEQSADIAMGVDEALESKKGQKDEVEAVGAGDQGMMFGFATNETDAYMPLPIYMAHKLSRRLTEVRKDGTLDYLRPDGKTQVTVEYENN 184          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_PHOPR (S-adenosylmethionine synthetase OS=Photobacterium profundum GN=metK PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.067e-51
Identity = 106/176 (60.23%), Postives = 126/176 (71.59%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            M   LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET  KT MVMV GEITT A VD E+I R+T R IG+V+ ++G DA+ C VL  I +QSPDI QGV     + P ++GAGDQG MFGYA+DET   MP     A +L  R  +VRKN T  WLRPD K+QVT  Y
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEEITRETIREIGYVNSEMGFDANSCAVLSAIGKQSPDINQGVD---REDPRELGAGDQGIMFGYASDETDVLMPAPVTYAHRLVQRQAKVRKNGTLPWLRPDAKSQVTFAY 173          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_CLOBM (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=metK PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.067e-51
Identity = 103/180 (57.22%), Postives = 126/180 (70.00%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYN 620
            LFTSESV EGHPDK+CDQISDAVLDA L++DP  +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+     G D + C V+ +I++QS DIA GV      +       + +GAGDQG MFG+AT+ET E+MP+   +A KL  RL+EVRKN T  +LRPDGKTQVT EY N
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYEN 183          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_CLOBJ (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=metK PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.067e-51
Identity = 103/180 (57.22%), Postives = 126/180 (70.00%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYN 620
            LFTSESV EGHPDK+CDQISDAVLDA L++DP  +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+     G D + C V+ +I++QS DIA GV      +       + +GAGDQG MFG+AT+ET E+MP+   +A KL  RL+EVRKN T  +LRPDGKTQVT EY N
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYEN 183          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_CLOBH (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.067e-51
Identity = 103/180 (57.22%), Postives = 126/180 (70.00%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYN 620
            LFTSESV EGHPDK+CDQISDAVLDA L++DP  +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+     G D + C V+ +I++QS DIA GV      +       + +GAGDQG MFG+AT+ET E+MP+   +A KL  RL+EVRKN T  +LRPDGKTQVT EY N
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYEN 183          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_CLOB1 (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.067e-51
Identity = 103/180 (57.22%), Postives = 126/180 (70.00%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYN 620
            LFTSESV EGHPDK+CDQISDAVLDA L++DP  +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+     G D + C V+ +I++QS DIA GV      +       + +GAGDQG MFG+AT+ET E+MP+   +A KL  RL+EVRKN T  +LRPDGKTQVT EY N
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYEN 183          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_GEOKA (S-adenosylmethionine synthetase OS=Geobacillus kaustophilus GN=metK PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.820e-51
Identity = 108/185 (58.38%), Postives = 128/185 (69.19%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV-------HGHFT-KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNG 629
            LFTSESV EGHPDK+CDQISDA+LDA LE+DP ++VACET   T +V+V GEITT   VD  +IVRDT R IG+     G DAD C VL +I++QSPDIA GV        G  T +  E IGAGDQG MFG+A +ET E MP+   LA +L  RL EVRK     +LRPDGKTQVT E Y++NG
Sbjct:    7 LFTSESVTEGHPDKICDQISDAILDAILEKDPNARVACETSVTTGLVLVSGEITTSTYVDIPRIVRDTVREIGYTRAKYGFDADTCAVLTSIDEQSPDIAMGVDRALEAREGQMTDEEIEAIGAGDQGLMFGFACNETEELMPMPISLAHRLARRLAEVRKTDVLPYLRPDGKTQVTIE-YDENG 190          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.820e-51
Identity = 103/181 (56.91%), Postives = 123/181 (67.96%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYND 623
            LFTSESV EGHPDK+CDQISDAVLDA   +DP ++VACET   T +VMV GEITT   VD  KI R+T ++IG+     G D + C V+  I++QS DIA GV      R       + +GAGDQG MFG+AT+ET EFMP    +A +L  RLTEVRKN T  +LRPDGKTQVT EY ND
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAIFAKDPNARVACETAVTTGLVMVMGEITTNCYVDIPKIARETIKNIGYDRAKYGFDCETCSVMTTIDEQSSDIAMGVDEALESRAGEKIDIDAVGAGDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYEND 184          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.820e-51
Identity = 103/181 (56.91%), Postives = 123/181 (67.96%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYND 623
            LFTSESV EGHPDK+CDQISDAVLDA   +DP ++VACET   T +VMV GEITT   VD  KI R+T ++IG+     G D + C V+  I++QS DIA GV      R       + +GAGDQG MFG+AT+ET EFMP    +A +L  RLTEVRKN T  +LRPDGKTQVT EY ND
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAIFAKDPNARVACETAVTTGLVMVMGEITTNCYVDIPKIARETIKNIGYDRAKYGFDCETCSVMTTIDEQSSDIAMGVDEALESRAGEKIDIDAVGAGDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYEND 184          
The following BLAST results are available for this feature:
BLAST of DC900307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CLOBL8.171e-5257.78S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBA8.171e-5256.91S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_PHOPR1.067e-5160.23S-adenosylmethionine synthetase OS=Photobacterium ... [more]
METK_CLOBM1.067e-5157.22S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBJ1.067e-5157.22S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBH1.067e-5157.22S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOB11.067e-5157.22S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_GEOKA1.820e-5158.38S-adenosylmethionine synthetase OS=Geobacillus kau... [more]
METK_CLOPS1.820e-5156.91S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP11.820e-5156.91S-adenosylmethionine synthetase OS=Clostridium per... [more]

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Properties
Property NameValue
Genbank descriptionDC900307 VSS Citrus sinensis cDNA clone VS28659 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900307 ID=DC900307; Name=DC900307; organism=Citrus sinensis; type=EST; length=635bp
TTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCTTAGAT
CTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTTCT
ATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACC
AGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCAGGATCCTGAGAGC
AAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGG
AGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGACA
CTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGACGCCGAT
CACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCGGATATTGCCCA
GGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGGTG
ACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCTGAATTTATG
CCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAGGT
TAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCAGG
TCACTGNTGAGTACTACAACGACAATGGTGCCATG
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