DC900307

Overview
NameDC900307
Unique NameDC900307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:162..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_BURCH (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain HI2424) GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.492e-45
Identity = 96/173 (55.49%), Postives = 118/173 (68.21%), Query Frame = 3
Query:   96 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            +LFTSESV+EGHPDK+ DQISDA+LDA LEQD  S+VA ET   T +V++ GEITT A +DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MPL   L+ +L  R   +R++    WLRPD K+QVT  Y
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDRAHDDN-LDQGAGDQGLMFGYACDETPELMPLPIYLSHRLVERQASLRRDGRLQWLRPDAKSQVTVRY 176          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_BURCC (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain MC0-3) GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.492e-45
Identity = 96/173 (55.49%), Postives = 118/173 (68.21%), Query Frame = 3
Query:   96 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            +LFTSESV+EGHPDK+ DQISDA+LDA LEQD  S+VA ET   T +V++ GEITT A +DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MPL   L+ +L  R   +R++    WLRPD K+QVT  Y
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDRAHDDN-LDQGAGDQGLMFGYACDETPELMPLPIYLSHRLVERQASLRRDGRLQWLRPDAKSQVTVRY 176          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_BURCA (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain AU 1054) GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.492e-45
Identity = 96/173 (55.49%), Postives = 118/173 (68.21%), Query Frame = 3
Query:   96 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            +LFTSESV+EGHPDK+ DQISDA+LDA LEQD  S+VA ET   T +V++ GEITT A +DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MPL   L+ +L  R   +R++    WLRPD K+QVT  Y
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDRAHDDN-LDQGAGDQGLMFGYACDETPELMPLPIYLSHRLVERQASLRRDGRLQWLRPDAKSQVTVRY 176          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_BUCAP (S-adenosylmethionine synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.492e-45
Identity = 94/178 (52.81%), Postives = 123/178 (69.10%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYN 620
            M  +LFTSESV+EGHPDK+ DQISDA+LD  ++QD +++VACET  KT MV++ GEITT A VD E+I R+T  +IG+++ + G DA+ C VL  I +QSPDI QGV       P + GAGDQG +FGYAT+ET   MP     A  L  + +E+RK +   WLRPD K+QVT +Y N
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDALLDEIIKQDLKARVACETYVKTGMVLIGGEITTTAWVDVEEITRNTINNIGYINSETGFDANSCAVLSTIGKQSPDITQGVD---RCNPLEQGAGDQGIIFGYATNETEVLMPAPITYAHLLVKKQSELRKKNILHWLRPDAKSQVTFKYKN 175          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_BIFAA (S-adenosylmethionine synthetase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.492e-45
Identity = 100/188 (53.19%), Postives = 119/188 (63.30%), Query Frame = 3
Query:   90 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV---------HGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDN 626
            E  L ++ESV EGHPDK+CDQISDA+LD  L QDP S VA ETC       VFGE+T++   D + IVR   R+IG+ S  VGLDAD C V V++ +QSP+I QGV              +R E  GAGDQG MFGYA DET   MPL   LA +L  RL EVRK+     LRPDGKTQVT EY +D+
Sbjct:    3 ELKLISAESVTEGHPDKVCDQISDAILDDMLAQDPHSHVAVETCATVGQFFVFGEVTSEGYSDIQNIVRSVVRNIGYTSSRVGLDADSCGVTVSLTEQSPEINQGVARLSGEEESKASREQRYEAQGAGDQGVMFGYACDETDVLMPLPIHLAHRLAYRLAEVRKSGEVPHLRPDGKTQVTIEYDDDD 190          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_ACIBY (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain AYE) GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.492e-45
Identity = 94/177 (53.11%), Postives = 119/177 (67.23%), Query Frame = 3
Query:   90 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYN 620
            E  +FTSESV+EGHPDK+ DQISDA+LDA L++DP ++VACET  KT  V++ GEITT A +D E +VR T   IG+   D+G D   C V+  I +QSP+IAQGV     ++PED GAGDQG MFGYA+ ET   MP     A +L  R  E+R++    WLRPD K+QVT  Y N
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQGAGDQGLMFGYASRETDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAYEN 176          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_ACIBT (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=metK PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.492e-45
Identity = 94/177 (53.11%), Postives = 119/177 (67.23%), Query Frame = 3
Query:   90 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYN 620
            E  +FTSESV+EGHPDK+ DQISDA+LDA L++DP ++VACET  KT  V++ GEITT A +D E +VR T   IG+   D+G D   C V+  I +QSP+IAQGV     ++PED GAGDQG MFGYA+ ET   MP     A +L  R  E+R++    WLRPD K+QVT  Y N
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQGAGDQGLMFGYASRETDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAYEN 176          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_ACIBS (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain SDF) GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.492e-45
Identity = 94/177 (53.11%), Postives = 119/177 (67.23%), Query Frame = 3
Query:   90 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYN 620
            E  +FTSESV+EGHPDK+ DQISDA+LDA L++DP ++VACET  KT  V++ GEITT A +D E +VR T   IG+   D+G D   C V+  I +QSP+IAQGV     ++PED GAGDQG MFGYA+ ET   MP     A +L  R  E+R++    WLRPD K+QVT  Y N
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQGAGDQGLMFGYASRETDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAYEN 176          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_ACIBC (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain ACICU) GN=metK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.492e-45
Identity = 94/177 (53.11%), Postives = 119/177 (67.23%), Query Frame = 3
Query:   90 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYN 620
            E  +FTSESV+EGHPDK+ DQISDA+LDA L++DP ++VACET  KT  V++ GEITT A +D E +VR T   IG+   D+G D   C V+  I +QSP+IAQGV     ++PED GAGDQG MFGYA+ ET   MP     A +L  R  E+R++    WLRPD K+QVT  Y N
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANIDVEAVVRQTVNGIGYHHSDLGFDGSTCAVINMIGKQSPEIAQGVD---RQKPEDQGAGDQGLMFGYASRETDVLMPAPISYAHRLMERQAELRRSGALPWLRPDAKSQVTFAYEN 176          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_THEFY (S-adenosylmethionine synthetase OS=Thermobifida fusca (strain YX) GN=metK PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.949e-45
Identity = 100/183 (54.64%), Postives = 116/183 (63.39%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI-------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            M   LFTSESV EGHPDK+ DQISDA+LD+ L  DP S+VA ET   T +V V GE+TT   VD   I+R+    IG+ S   G D   C V V+I  QSPDIAQGV   +  R E+I       GAGDQG MFGYA +ET E MPL   LA  L  RL EVR++ T  +LRPDGKTQVT EY
Sbjct:    1 MSRRLFTSESVTEGHPDKIADQISDAILDSMLRDDPHSRVAVETLITTGLVHVAGEVTTSTYVDIPTIIREKILEIGYDSSAKGFDGASCGVSVSIGGQSPDIAQGVDNAYEAREEEIFDDLDRQGAGDQGLMFGYANNETPELMPLPITLAHALSQRLAEVRRDGTIPYLRPDGKTQVTVEY 183          
The following BLAST results are available for this feature:
BLAST of DC900307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BURCH1.492e-4555.49S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCC1.492e-4555.49S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCA1.492e-4555.49S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BUCAP1.492e-4552.81S-adenosylmethionine synthetase OS=Buchnera aphidi... [more]
METK_BIFAA1.492e-4553.19S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_ACIBY1.492e-4553.11S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_ACIBT1.492e-4553.11S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_ACIBS1.492e-4553.11S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_ACIBC1.492e-4553.11S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_THEFY1.949e-4554.64S-adenosylmethionine synthetase OS=Thermobifida fu... [more]

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Properties
Property NameValue
Genbank descriptionDC900307 VSS Citrus sinensis cDNA clone VS28659 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900307 ID=DC900307; Name=DC900307; organism=Citrus sinensis; type=EST; length=635bp
TTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCTTAGAT
CTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTTCT
ATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACC
AGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCAGGATCCTGAGAGC
AAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGG
AGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGACA
CTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGACGCCGAT
CACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCGGATATTGCCCA
GGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGGTG
ACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCTGAATTTATG
CCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAGGT
TAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCAGG
TCACTGNTGAGTACTACAACGACAATGGTGCCATG
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