DC900307

Overview
NameDC900307
Unique NameDC900307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK1_RHOPB (S-adenosylmethionine synthetase 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=metK1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.546e-45
Identity = 90/179 (50.28%), Postives = 116/179 (64.80%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYND 623
            M     TSESV EGHPDK+CDQISD +LDAC+ QDP S+VA ET    N+ ++ GEITT A++D E+  R   ++IG+    +G D+D C +L N+  QSPDI  GV      R +++GAGDQG  +GYA DET+  MP+   LA  L  RLT +R++ T  WLRPDGK QVT  Y  D
Sbjct:    1 MREHCVTSESVTEGHPDKVCDQISDGILDACVAQDPASRVAVETLVSGNIAVIAGEITTTAQIDAERTARAVIKAIGYDDPALGFDSDSCFILTNLRTQSPDINLGV-----SRGDELGAGDQGVFYGYACDETANLMPIPIALAHTLSLRLTMMRRDGTLPWLRPDGKVQVTMRYGRD 174          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_THET8 (S-adenosylmethionine synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=metK PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 100/182 (54.95%), Postives = 118/182 (64.84%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR------PED-IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYND 623
            L TSESV EGHPDKL D+ISDA+LDA + QD +++VA ET   T +V V GEITT+  VD   +VR T R +G+     G DAD C VL  I++QSPDIA GV+  +  R      P D +GAGDQG MFGYATDET E MPL   LA +L  RL EVRK     +LRPDGK QVT  Y  D
Sbjct:    6 LVTSESVTEGHPDKLADRISDAILDALIAQDKKARVAAETLVTTGLVFVAGEITTEGYVDIPNLVRKTVREVGYTRAKYGFDADTCAVLTAIDEQSPDIAGGVNLSYEWRVLKSTDPLDRVGAGDQGLMFGYATDETPELMPLPITLAHRLTMRLAEVRKTGLLPYLRPDGKAQVTVVYEGD 187          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_THET2 (S-adenosylmethionine synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=metK PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 100/182 (54.95%), Postives = 118/182 (64.84%), Query Frame = 3
Query:   99 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR------PED-IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYND 623
            L TSESV EGHPDKL D+ISDA+LDA + QD +++VA ET   T +V V GEITT+  VD   +VR T R +G+     G DAD C VL  I++QSPDIA GV+  +  R      P D +GAGDQG MFGYATDET E MPL   LA +L  RL EVRK     +LRPDGK QVT  Y  D
Sbjct:    6 LVTSESVTEGHPDKLADRISDAILDALIAQDKKARVAAETLVTTGLVFVAGEITTEGYVDIPNLVRKTVREVGYTRAKYGFDADTCAVLTAIDEQSPDIAGGVNLSYEWRVLKSTDPLDRVGAGDQGLMFGYATDETPELMPLPITLAHRLTMRLAEVRKTGLLPYLRPDGKAQVTVVYEGD 187          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_NEIMB (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup B GN=metK PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 95/185 (51.35%), Postives = 125/185 (67.57%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI----GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNG 629
            M  +LFTSESV+EGHPDK+ DQ+SDA+LDA L QDP+++VA ET   T + ++ GEITT A+VDY K+ R+T + IG+ S ++G DA+ C V V  +QQSPDIAQGV+       E I    GAGDQG MFGYA DET   MP +   + +L  R +E+RK+    WLRPD K Q+T  Y ++ G
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAETLVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPDIAQGVN-----EGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGRLPWLRPDAKAQLTVVYDSETG 180          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_NEIMA (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup A GN=metK PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 95/185 (51.35%), Postives = 125/185 (67.57%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI----GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNG 629
            M  +LFTSESV+EGHPDK+ DQ+SDA+LDA L QDP+++VA ET   T + ++ GEITT A+VDY K+ R+T + IG+ S ++G DA+ C V V  +QQSPDIAQGV+       E I    GAGDQG MFGYA DET   MP +   + +L  R +E+RK+    WLRPD K Q+T  Y ++ G
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAETLVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPDIAQGVN-----EGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGRLPWLRPDAKAQLTVVYDSETG 180          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_NEIM0 (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup C (strain 053442) GN=metK PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 95/185 (51.35%), Postives = 125/185 (67.57%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI----GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNG 629
            M  +LFTSESV+EGHPDK+ DQ+SDA+LDA L QDP+++VA ET   T + ++ GEITT A+VDY K+ R+T + IG+ S ++G DA+ C V V  +QQSPDIAQGV+       E I    GAGDQG MFGYA DET   MP +   + +L  R +E+RK+    WLRPD K Q+T  Y ++ G
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAETLVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPDIAQGVN-----EGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGRLPWLRPDAKAQLTVVYDSETG 180          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_NEIG2 (S-adenosylmethionine synthetase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=metK PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 95/185 (51.35%), Postives = 125/185 (67.57%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI----GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNG 629
            M  +LFTSESV+EGHPDK+ DQ+SDA+LDA L QDP+++VA ET   T + ++ GEITT A+VDY K+ R+T + IG+ S ++G DA+ C V V  +QQSPDIAQGV+       E I    GAGDQG MFGYA DET   MP +   + +L  R +E+RK+    WLRPD K Q+T  Y ++ G
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAETLVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPDIAQGVN-----EGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGRLPWLRPDAKAQLTVVYDSETG 180          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_NEIG1 (S-adenosylmethionine synthetase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=metK PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 95/185 (51.35%), Postives = 125/185 (67.57%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI----GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNG 629
            M  +LFTSESV+EGHPDK+ DQ+SDA+LDA L QDP+++VA ET   T + ++ GEITT A+VDY K+ R+T + IG+ S ++G DA+ C V V  +QQSPDIAQGV+       E I    GAGDQG MFGYA DET   MP +   + +L  R +E+RK+    WLRPD K Q+T  Y ++ G
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAETLVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPDIAQGVN-----EGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGRLPWLRPDAKAQLTVVYDSETG 180          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_LACLA (S-adenosylmethionine synthetase OS=Lactococcus lactis subsp. lactis GN=metK PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 99/189 (52.38%), Postives = 127/189 (67.20%), Query Frame = 3
Query:   90 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV---------HGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNG 629
            E  LFTSESV+EGHPDK+ DQISDA+LDA L QDP + VACET   T  V VFGEI+T A VD   +VR+T + IG+   + G D     V V++ +QS DIAQGV         +G      + IGAGDQG MFG+AT+ET+E+MPL+  L+ KL  +L ++RK+   S+LRPD K+QVT E Y+DNG
Sbjct:    3 EKHLFTSESVSEGHPDKVADQISDAILDAILAQDPHAHVACETVVYTGTVNVFGEISTSAYVDIAHVVRETIKKIGYTDSENGFDYKSVGVHVSLVEQSSDIAQGVNEAEEVRDKNGQLVDPLDLIGAGDQGMMFGFATNETAEYMPLAISLSHKLVKKLADLRKSGEISYLRPDAKSQVTVE-YDDNG 190          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_CYAP4 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=metK PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 95/182 (52.20%), Postives = 122/182 (67.03%), Query Frame = 3
Query:   90 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            + +LFTSESV EGHPDK+CDQISD +LDA L QDP+S+VA E    T +V++ GEIT++A+V+Y  +VR     IG+ S + G  A  C VLV +++QSPDIAQGV+     R        + IGAGDQG MFG+A +ET EFMPL   LA ++  +L  VRK     +LRPDGKTQVT  Y
Sbjct:    3 QRYLFTSESVTEGHPDKICDQISDTILDALLSQDPQSRVAAEVVVNTGLVLITGEITSQAQVNYVDLVRKKITEIGYTSAENGFCATSCAVLVALDEQSPDIAQGVNVAQESRQQLSDEALDRIGAGDQGIMFGFACNETPEFMPLPISLAHRMARKLAAVRKTHQLPYLRPDGKTQVTVIY 184          
The following BLAST results are available for this feature:
BLAST of DC900307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_RHOPB2.546e-4550.28S-adenosylmethionine synthetase 1 OS=Rhodopseudomo... [more]
METK_THET83.325e-4554.95S-adenosylmethionine synthetase OS=Thermus thermop... [more]
METK_THET23.325e-4554.95S-adenosylmethionine synthetase OS=Thermus thermop... [more]
METK_NEIMB3.325e-4551.35S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIMA3.325e-4551.35S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIM03.325e-4551.35S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_NEIG23.325e-4551.35S-adenosylmethionine synthetase OS=Neisseria gonor... [more]
METK_NEIG13.325e-4551.35S-adenosylmethionine synthetase OS=Neisseria gonor... [more]
METK_LACLA3.325e-4552.38S-adenosylmethionine synthetase OS=Lactococcus lac... [more]
METK_CYAP43.325e-4552.20S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]

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Properties
Property NameValue
Genbank descriptionDC900307 VSS Citrus sinensis cDNA clone VS28659 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900307 ID=DC900307; Name=DC900307; organism=Citrus sinensis; type=EST; length=635bp
TTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCTTAGAT
CTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTTCT
ATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACC
AGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCAGGATCCTGAGAGC
AAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGG
AGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGACA
CTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGACGCCGAT
CACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCGGATATTGCCCA
GGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGGTG
ACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCTGAATTTATG
CCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAGGT
TAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCAGG
TCACTGNTGAGTACTACAACGACAATGGTGCCATG
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