DC900307

Overview
NameDC900307
Unique NameDC900307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:162..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_ACACA (S-adenosylmethionine synthetase OS=Acanthamoeba castellanii GN=metK PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 6.885e-67
Identity = 119/182 (65.38%), Postives = 144/182 (79.12%), Query Frame = 3
Query:   90 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNGAM 635
            +T LFTSE V+E HPDKLCDQ+SDA+LDACL  DP SKVACET +KT MVMVFGEITTK+  DY+K++R+T + IGF    +G D   C +LV IEQQSPDIAQGV  H  +  +D+GAGDQGHMFG+AT+ET EFMP++HVLAT+L  R+TEVR NS  SW+RPD KTQVT EY N+NG +
Sbjct:    5 KTLLFTSECVSESHPDKLCDQVSDAILDACLANDPYSKVACETASKTGMVMVFGEITTKSSFDYQKVIRETVKRIGFTDSSIGFDYKTCNILVAIEQQSPDIAQGV--HVGRSDDDLGAGDQGHMFGHATNETPEFMPMTHVLATRLCQRMTEVRNNSILSWMRPDAKTQVTVEYRNENGTL 184          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK2_YEAST (S-adenosylmethionine synthetase 2 OS=Saccharomyces cerevisiae GN=SAM2 PE=1 SV=3)

HSP 1 Score: 243.817 bits (621), Expect = 5.455e-64
Identity = 119/184 (64.67%), Postives = 143/184 (77.72%), Query Frame = 3
Query:   78 LDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNG 629
            + K +TFLFTSESV EGHPDK+CDQ+SDA+LDACLEQDP SKVACET  KT M+MVFGEITTKA++DY++IVRDT + IG+     G D   C VLV IEQQSPDIAQG+  H+ K  ED+GAGDQG MFGYATDET E +PL+ +LA KL   + + R++ +  WLRPD KTQVT EY +DNG
Sbjct:    1 MSKSKTFLFTSESVGEGHPDKICDQVSDAILDACLEQDPFSKVACETAAKTGMIMVFGEITTKARLDYQQIVRDTIKKIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGL--HYEKSLEDLGAGDQGIMFGYATDETPEGLPLTILLAHKLNMAMADARRDGSLPWLRPDTKTQVTVEYEDDNG 182          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_DICDI (S-adenosylmethionine synthetase OS=Dictyostelium discoideum GN=metK PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.073e-63
Identity = 119/176 (67.61%), Postives = 136/176 (77.27%), Query Frame = 3
Query:   87 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEY 614
            M ++LFTSESV EGHPDK+CDQ+SDAVLDACL QDP SKVACET TKT MVM+ GEITTKA VDY+K+VR+  + IG+     G D   C VLV IEQQSPDIAQGVH      PEDIGAGDQGHMFGYAT+ET   MPL+H LA++L  +LTE+R N T +W RPD KTQVT EY
Sbjct:    1 MSSYLFTSESVTEGHPDKICDQVSDAVLDACLAQDPLSKVACETATKTGMVMILGEITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVH-IGKVNPEDIGAGDQGHMFGYATNETPTLMPLTHFLASELVNKLTELRHNGTLAWARPDAKTQVTVEY 175          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.755e-62
Identity = 115/182 (63.19%), Postives = 145/182 (79.67%), Query Frame = 3
Query:   90 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNGAM 635
            +TFLFTSESV EGHPDK+CDQISDA+LDACL+ DP SKVACET +KT MVMVFGEITT++++DY+K++R+T +SIG+   + G D   C VLV IEQQSPDIAQG+  H+ K  E++GAGDQG MFGYATDET E +PL+ +LA KL A ++  R++ +  WLRPD KTQVT EY  +NGA+
Sbjct:    3 QTFLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGL--HYEKALEELGAGDQGIMFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAV 182          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK1_YEAST (S-adenosylmethionine synthetase 1 OS=Saccharomyces cerevisiae GN=SAM1 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 1.755e-62
Identity = 118/179 (65.92%), Postives = 139/179 (77.65%), Query Frame = 3
Query:   93 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNG 629
            TFLFTSESV EGHPDK+CDQ+SDA+LDACL +DP SKVACET  KT M+MVFGEITTKA++DY+KIVRDT + IG+     G D   C VLV IEQQSPDIAQGVH    K  EDIGAGDQG MFGYATDET E +PL+ +LA KL   + + R++ + +WLRPD KTQVT EY +D+G
Sbjct:    4 TFLFTSESVGEGHPDKICDQVSDAILDACLAEDPHSKVACETAAKTGMIMVFGEITTKAQLDYQKIVRDTIKKIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGVHEE--KDLEDIGAGDQGIMFGYATDETPEGLPLTILLAHKLNMAMADARRDGSLAWLRPDTKTQVTVEYKDDHG 180          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK2_PONAB (S-adenosylmethionine synthetase isoform type-2 OS=Pongo abelii GN=MAT2A PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.909e-62
Identity = 117/181 (64.64%), Postives = 139/181 (76.80%), Query Frame = 3
Query:   93 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNGAM 635
            TFLFTSESV EGHPDK+CDQISDAVLDA L+QDP++KVACET  KT M+++ GEIT++A VDY+K+VR+  + IG+     G D   C VLV +EQQSPDIAQGV  H  +  EDIGAGDQG MFGYATDET E MPL+ VLA KL A+L E+R+N T  WLRPD KTQVT +Y  D GA+
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAV 195          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK2_MACFA (S-adenosylmethionine synthetase isoform type-2 OS=Macaca fascicularis GN=MAT2A PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.909e-62
Identity = 117/181 (64.64%), Postives = 139/181 (76.80%), Query Frame = 3
Query:   93 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNGAM 635
            TFLFTSESV EGHPDK+CDQISDAVLDA L+QDP++KVACET  KT M+++ GEIT++A VDY+K+VR+  + IG+     G D   C VLV +EQQSPDIAQGV  H  +  EDIGAGDQG MFGYATDET E MPL+ VLA KL A+L E+R+N T  WLRPD KTQVT +Y  D GA+
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAV 195          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK2_HUMAN (S-adenosylmethionine synthetase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.909e-62
Identity = 117/181 (64.64%), Postives = 139/181 (76.80%), Query Frame = 3
Query:   93 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNGAM 635
            TFLFTSESV EGHPDK+CDQISDAVLDA L+QDP++KVACET  KT M+++ GEIT++A VDY+K+VR+  + IG+     G D   C VLV +EQQSPDIAQGV  H  +  EDIGAGDQG MFGYATDET E MPL+ VLA KL A+L E+R+N T  WLRPD KTQVT +Y  D GA+
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAV 195          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK2_MOUSE (S-adenosylmethionine synthetase isoform type-2 OS=Mus musculus GN=Mat2a PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 5.106e-62
Identity = 116/181 (64.09%), Postives = 139/181 (76.80%), Query Frame = 3
Query:   93 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNGAM 635
            TFLFTSESV EGHPDK+CDQISDAVLDA L+QDP++KVACET  KT M+++ GEIT++A +DY+K+VR+  + IG+     G D   C VLV +EQQSPDIAQGV  H  +  EDIGAGDQG MFGYATDET E MPL+ VLA KL A+L E+R+N T  WLRPD KTQVT +Y  D GA+
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAIDYQKVVREAIKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAV 195          
BLAST of DC900307 vs. ExPASy Swiss-Prot
Match: METK2_RAT (S-adenosylmethionine synthetase isoform type-2 OS=Rattus norvegicus GN=Mat2a PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.137e-61
Identity = 115/181 (63.54%), Postives = 139/181 (76.80%), Query Frame = 3
Query:   93 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTXEYYNDNGAM 635
            TFLFTSESV EGHPDK+CDQI+DAVLDA L+QDP++KVACET  KT M+++ GEIT++A +DY+K+VR+  + IG+     G D   C VLV +EQQSPDIAQGV  H  +  EDIGAGDQG MFGYATDET E MPL+ VLA KL A+L E+R+N T  WLRPD KTQVT +Y  D GA+
Sbjct:   17 TFLFTSESVGEGHPDKICDQINDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAIDYQKVVREAIKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAV 195          
The following BLAST results are available for this feature:
BLAST of DC900307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ACACA6.885e-6765.38S-adenosylmethionine synthetase OS=Acanthamoeba ca... [more]
METK2_YEAST5.455e-6464.67S-adenosylmethionine synthetase 2 OS=Saccharomyces... [more]
METK_DICDI2.073e-6367.61S-adenosylmethionine synthetase OS=Dictyostelium d... [more]
METK_SCHPO1.755e-6263.19S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK1_YEAST1.755e-6265.92S-adenosylmethionine synthetase 1 OS=Saccharomyces... [more]
METK2_PONAB3.909e-6264.64S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_MACFA3.909e-6264.64S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_HUMAN3.909e-6264.64S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_MOUSE5.106e-6264.09S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_RAT1.137e-6163.54S-adenosylmethionine synthetase isoform type-2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionDC900307 VSS Citrus sinensis cDNA clone VS28659 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900307 ID=DC900307; Name=DC900307; organism=Citrus sinensis; type=EST; length=635bp
TTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCTTAGAT
CTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTTCT
ATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACC
AGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCAGGATCCTGAGAGC
AAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGG
AGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGACA
CTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGACGCCGAT
CACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCGGATATTGCCCA
GGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGGTG
ACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCTCTGAATTTATG
CCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAGGT
TAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCAGG
TCACTGNTGAGTACTACAACGACAATGGTGCCATG
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