DC900303

Overview
NameDC900303
Unique NameDC900303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9730 contig Csv1_Contig9730:368..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 65/179 (36.31%), Postives = 95/179 (53.07%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGL--VKAFMKHEYNSLGGGANTVA----SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAA 517
            +  + Y   GISGGH NPAV+ GL +A ++     V Y++AQ  GAI    +  V A  K ++   G  AN        GY+  +AL  E++ T   +  +  +T        S VPV  AP+ IG  + ++HL +IP+T T +NPARS G A ++  D A    W+FWV P +GA+ A
Sbjct:   47 VLTMAYAVGGISGGHFNPAVSVGLAVAGRMPPASLVGYILAQVTGAIAAAAVLYVIASGKADFQLGGFAANGYGEHSPGGYSLTAALVTEVVMTAFFLLIILGST-------HSRVPVGFAPIAIGLGLTLIHLVSIPVTNTSVNPARSTGQA-LFVGDWAISQLWLFWVAPLIGAVIA 217          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 64/187 (34.22%), Postives = 103/187 (55.08%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVK--AFMKHEYNSLGGGANT-----VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG-ALAAAAYHQYI 538
            +  + +    ISG HINPAV+ GL+ A++      + Y+ AQ LG I G G++   A  K  ++  GG A+         GY   + L  E++ TF+ +  +  +TD +R+ +       AP+ IG ++ ++HL +IP+T T +NPARS G A ++  D A  + W+FW+ P VG ALA   YH ++
Sbjct:   49 LLTMAFAIGHISGCHINPAVSIGLWAAKRFPATELLPYIAAQVLGGIAGAGVLYLIAGGKAGFSLSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGSTD-RRAPKG-----FAPIAIGLSLTLIHLISIPVTNTSVNPARSTGPA-LFVGDWAIAELWLFWLAPIVGAALAGLFYHAFL 228          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 65/189 (34.39%), Postives = 92/189 (48.68%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVAS---------GYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA-AYHQYI 538
            +F   Y    ISGGH NPAV+FGL++ ++    +   Y+ AQ LGAI     +    +   N    G+N +A+         GY   +AL  E + TF+ +  +   TD    A        AP  IG A+ ++HL +IPIT T +NPARS G A+   N       W+FW+ P  GAL A   YH  +
Sbjct:   54 VFTGAYALGHISGGHFNPAVSFGLWMGKRFPGSQLAPYIGAQVLGAIVASLFIFIVAQGGPNFSLDGSNPLATNGFGDHSPQGYGFLAALLIEFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPARSTGVALFCGNPALIGQLWLFWLAPIAGALLAGFVYHNVL 236          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPZ_PHOLL (Aquaporin Z OS=Photorhabdus luminescens subsp. laumondii GN=aqpZ PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.217e-22
Identity = 58/188 (30.85%), Postives = 96/188 (51.06%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE---------YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 538
            +  ++Y    ISGGH NPAVT GL+   +   +  + Y+++Q +G I    ++      +         + S G G ++   G++  SA+ AEI+ T + +  +  ATD +        P  APL IG A+ +++L +IPIT T +NPARS  A  I+ N  A +  W FWV P +G +     ++ +
Sbjct:   47 VLTMIYAVGHISGGHFNPAVTIGLWAGGRFRAVEVIPYIISQVIGGILAAAVLYVIASGQVGFDATTSGFASNGFGEHS-PGGFSLQSAIVAEIVLTAIFLIVIIGATDRRAP------PGFAPLAIGLALVLINLISIPITNTSVNPARS-TAVAIFQNTWALEQLWFFWVMPIIGGIVGGGIYRLL 226          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.508e-22
Identity = 69/177 (38.98%), Postives = 100/177 (56.50%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAY 526
            +FV V   A  SGGH+NPAVTFGL +   ++++  + Y VAQ LGA     L++ F+ H         + V+ G  +   +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV   +   +  +W++WVGP + G LA   Y
Sbjct:   67 LFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLR-FVTH---GKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAAD---FAGNWVYWVGPLIGGGLAGLVY 232          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.508e-22
Identity = 61/179 (34.08%), Postives = 88/179 (49.16%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 520
            +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI    ++      +     GG            GY+  + L  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++ +  A    W+FWV P VGA+  A
Sbjct:   47 VLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVA-LFADRAALSQLWLFWVAPLVGAVIGA 218          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.508e-22
Identity = 61/179 (34.08%), Postives = 88/179 (49.16%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 520
            +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI    ++      +     GG            GY+  + L  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++ +  A    W+FWV P VGA+  A
Sbjct:   47 VLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVA-LFADRAALSQLWLFWVAPLVGAVIGA 218          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 61/179 (34.08%), Postives = 88/179 (49.16%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 520
            +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI    ++      +     GG            GY+  + L  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++ +  A    W+FWV P VGA+  A
Sbjct:   47 VLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTWVNPARSTGVA-LFADTAALSQLWLFWVAPLVGAVIGA 218          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.227e-21
Identity = 61/179 (34.08%), Postives = 86/179 (48.04%), Query Frame = 2
Query:   11 LVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRA 547
            L  C   ISG HINPAVT  L + R +S IRA  Y+ AQC G I G  L+       Y      A + ++        G E I TF++V   F +TDP +    +     +   IG A       ++P     +NPARS G + + N    WD HW++W GP VG +A+   ++YI  +
Sbjct:  113 LTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGN-----SAASIGCAYSACCFVSMPY----LNPARSLGPSFVLNK---WDSHWVYWFGPLVGGMASGLVYEYIFNS 279          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.227e-21
Identity = 61/187 (32.62%), Postives = 94/187 (50.27%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAF----MKHEYNSLGGGANTVA----SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 538
            +  + +    ISG H+NPAVT GL+   +      V Y++AQ +G +   G++       M  +  S G  +N        GY+  SAL  E++ T + +  +  ATD +           AP+ IG  + ++HL +IP+T T +NPARS G A +Y  D A    W+FWV P +GAL  A  ++ I
Sbjct:   46 VLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLYTIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEVVMTMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVA-LYVGDWATAQLWLFWVAPILGALLGAVAYKLI 225          
The following BLAST results are available for this feature:
BLAST of DC900303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
AQPZ1_RHIME1.893e-2236.31Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
AQPZ_GLOVI2.472e-2234.22Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
AQPZ_SYNY33.229e-2234.39Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
AQPZ_PHOLL4.217e-2230.85Aquaporin Z OS=Photorhabdus luminescens subsp. lau... [more]
TIP22_MAIZE5.508e-2238.98Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
AQPZ_BRUAB5.508e-2234.08Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA25.508e-2234.08Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
AQPZ_BRUME7.193e-2234.08Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
BIB_DROME1.227e-2134.08Neurogenic protein big brain OS=Drosophila melanog... [more]
AQPZ_VIBVU1.227e-2132.62Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900303 VSS Citrus sinensis cDNA clone VS28652 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900303 ID=DC900303; Name=DC900303; organism=Citrus sinensis; type=EST; length=658bp
GATCTTCGTCCTTGTTTACTGCACCGCTGGCATTTCTGGTGGTCACATTA
ACCCTGCTGTGACGTTTGGGCTGTTCTTGGCAAGGAAGGTATCATTGATC
AGGGCTGTGGCTTACATGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGT
TGGTTTGGTCAAGGCCTTCATGAAGCATGAGTACAACTCACTTGGTGGTG
GTGCTAACACTGTGGCTTCTGGCTACAACAAAGGATCAGCCTTGGGTGCT
GAGATTATTGGTACCTTCGTGCTTGTTTACACAGTCTTCTCGGCCACAGA
CCCCAAGAGAAGCGCTCGTGACTCTCACGTGCCCGTTTTGGCTCCACTTC
CAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACT
GGAACGGGCATCAACCCTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAA
CAATGACAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGTCCTTTCG
TTGGAGCATTGGCTGCAGCGGCATACCACCAGTACATCTTGAGGGCTGCT
GCTATCAAGGCTTTGGGATCATTCCGCAGCAACCCTTCAAACTAAGAAAG
CAAATTATGATGAATATGAACCACCAACCAGAATAGCTNTTTCCTTTCTC
TCTTTCTG
back to top