DC900303

Overview
NameDC900303
Unique NameDC900303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9730 contig Csv1_Contig9730:368..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.270e-18
Identity = 65/184 (35.33%), Postives = 91/184 (49.46%), Query Frame = 2
Query:   14 VYCTAG--ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKG----SALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGA-LAAAAYHQYIL 541
            V  TAG  +SGGH+NPAVT GL +   ++ +RAV Y+ AQ L +     L++         L GG  T      +G      L  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARSFG A+   +   W +HW++W+GP +G  LA   Y    L
Sbjct:   75 VLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLR--------FLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGD---WTNHWVYWIGPLLGGPLAGFVYESLFL 242          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.829e-18
Identity = 60/171 (35.09%), Postives = 86/171 (50.29%), Query Frame = 2
Query:    8 VLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 520
            VLVY    ISGGH NPAVT      R+  LI+  AY+VAQ LG+I   G ++      ++   G   TV +G N   A   E I TF L++ +       R+     V   A + IG  + +  +   P+TG  +NPARS G A ++     ++  WI+ + P VGA+A A
Sbjct:   83 VLVYTVGHISGGHFNPAVTIAFASTRRFPLIQVPAYVVAQLLGSILASGTLRLLFMGNHDQFSG---TVPNGTNL-QAFVFEFIMTFFLMFVICGVATDNRA-----VGEFAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGE---YEGIWIYLLAPVVGAIAGA 241          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.694e-18
Identity = 56/192 (29.17%), Postives = 90/192 (46.88%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAIC-------------GVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 538
            +  + Y    ISG H+NPAVT GL    +    + + Y++AQ  GAI              G  + K F  + Y++   G       Y+  +    E++ T + ++ +  AT  +  A        APL IG A+ M+HL +IP+T T +NPARS G A ++    A    W+FWV P +G       ++++
Sbjct:   48 VVTMAYAIGHISGCHLNPAVTVGLAAGGRFPAGQILPYVIAQVCGAIVAAELLYIIASGAPGFDVTKGFASNGYDAHSPGQ------YSMMACFLTEVVMTMMFLFIIMGATHGRAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPA-LFVGGWAMAQLWLFWVAPLIGGALGGVIYRWL 226          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.825e-18
Identity = 62/180 (34.44%), Postives = 87/180 (48.33%), Query Frame = 2
Query:   14 VYCTAG--ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGA-LAAAAYHQYIL 541
            V  TAG  +SGGH+NPAVT  L     ++  R+  Y+ AQ L +     L    +++    +    +T+ SG      L  EII TF L++ V++   DP+     S VP   PL  G  V    +A    +G  +NPARSFG A+       W  HWI+W+GP +G  LA   Y    L
Sbjct:   71 VLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLAS----SLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPR-----SSVPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATG---VWTHHWIYWLGPLIGGPLAGLVYESLFL 238          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.825e-18
Identity = 60/179 (33.52%), Postives = 93/179 (51.96%), Query Frame = 2
Query:   14 VYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGA---AVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 538
            +Y    ISG HINPAVT GL+  +K      V Y++AQ LGA  G  +          ++GG GA     G +   A+ AE++GTF+L+ T+      +R+ +       A + IG  V  +      I+G+ +NPAR+FG     +I+     W+ + I+ +GP VGA+ AA  +QY+
Sbjct:   70 IYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 61/189 (32.28%), Postives = 91/189 (48.15%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV-----ASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSA----RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 541
            +F  V+  A +SGGH+NPAVTF   +   +++  A+ Y  +Q LG+        A +   Y S G    T       +G+  G   G   + TF++VYTV  A DP+       +      L  L +G       LA   +TG  +NPARSFG AV+  +   + +  ++W GP VGA  AA  HQ ++
Sbjct:   66 LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGS------TFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEG---VLTFMVVYTVHVAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGH---YSNQAVYWAGPMVGAAVAALVHQALV 242          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 58/180 (32.22%), Postives = 91/180 (50.56%), Query Frame = 2
Query:   14 VYCTAG--ISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAYHQYIL 541
            V  TAG  +SGGH+NPAVT G+ +   ++ +RA+ Y+ AQ L +     L    +++    +    + + +G      L  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARSFG A+       W +HW++W+GP + G+LA   Y    +
Sbjct:   77 VLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLAS----SLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATG---VWTNHWVYWIGPLLGGSLAGFVYESLFM 244          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17
Identity = 65/187 (34.76%), Postives = 90/187 (48.13%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNND-----KAWDDHWIFWVGPFVGALAAAAYHQYILR 544
            I  ++Y    ISG HINPAVT  L+   +      V Y+VAQ +GA  G  L  A +     ++GG GA     G   G A+  E IGTF+L+  +      +R+      P  A L IG  V  +      ITG+ +NPAR+FG    Y  D       W    I+ +GP VGA+AAA  + Y+ +
Sbjct:   67 IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGP---YLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYLAK 245          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: AQPM_METTH (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum GN=aqpM PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 59/179 (32.96%), Postives = 89/179 (49.72%), Query Frame = 2
Query:   14 VYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGA---AVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 538
            +Y    ISG HINPAVT GL+  +K      V Y++AQ LGA     +          ++GG GA     G     A+ AE +GTF+L+ T+      +R+ +       A + IG  V  +      ITG+ +NPAR+FG     +++     W+   I+ +GP VGA+ AA  +QY+
Sbjct:   70 IYALGNISGCHINPAVTIGLWSVKKFPGRDVVPYIIAQLLGAAFASFIFLQCAGITAATIGGLGATAPFPGIGYWQAMLAETVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTIGNITGSSLNPARTFGPYLNDMVFAGTNLWNYFPIYVIGPVVGAVLAALTYQYL 243          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: NIP23_MAIZE (Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.516e-16
Identity = 58/179 (32.40%), Postives = 89/179 (49.72%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 538
            + V++Y T  ISG H+NPAVT      R    I+   Y  AQ  GA+C   ++KA ++     +     T  SG +   AL  EI+ TF +++   +     R+     V  LA L +G AV +  +   P++G  +NPAR+   AV  N    +   WI+++GP VG L+ A  + YI
Sbjct:   98 VTVMIYATGHISGAHMNPAVTLSFACFRHFPWIQVPFYWAAQFTGAMCAAFVLKAVLQ----PIAVIGTTTPSGPH-WHALAIEIVVTFNMMFVTCAVATDSRA-----VGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLGPVVGTLSGAWVYTYI 263          
The following BLAST results are available for this feature:
BLAST of DC900303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
TIP41_MAIZE1.270e-1835.33Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
NO26_SOYBN2.829e-1835.09Nodulin-26 OS=Glycine max PE=1 SV=2[more]
AQPZ_BRAJA3.694e-1829.17Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
TIP41_ORYSJ4.825e-1834.44Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
AQPM_METTM4.825e-1833.52Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
TIP51_ORYSJ1.075e-1732.28Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP42_MAIZE1.075e-1732.22Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
AQPM_ARCFU6.967e-1734.76Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
AQPM_METTH1.188e-1632.96Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
NIP23_MAIZE4.516e-1632.40Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900303 VSS Citrus sinensis cDNA clone VS28652 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900303 ID=DC900303; Name=DC900303; organism=Citrus sinensis; type=EST; length=658bp
GATCTTCGTCCTTGTTTACTGCACCGCTGGCATTTCTGGTGGTCACATTA
ACCCTGCTGTGACGTTTGGGCTGTTCTTGGCAAGGAAGGTATCATTGATC
AGGGCTGTGGCTTACATGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGT
TGGTTTGGTCAAGGCCTTCATGAAGCATGAGTACAACTCACTTGGTGGTG
GTGCTAACACTGTGGCTTCTGGCTACAACAAAGGATCAGCCTTGGGTGCT
GAGATTATTGGTACCTTCGTGCTTGTTTACACAGTCTTCTCGGCCACAGA
CCCCAAGAGAAGCGCTCGTGACTCTCACGTGCCCGTTTTGGCTCCACTTC
CAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACT
GGAACGGGCATCAACCCTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAA
CAATGACAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGTCCTTTCG
TTGGAGCATTGGCTGCAGCGGCATACCACCAGTACATCTTGAGGGCTGCT
GCTATCAAGGCTTTGGGATCATTCCGCAGCAACCCTTCAAACTAAGAAAG
CAAATTATGATGAATATGAACCACCAACCAGAATAGCTNTTTCCTTTCTC
TCTTTCTG
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