DC900303

Overview
NameDC900303
Unique NameDC900303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 61/214 (28.50%), Postives = 91/214 (42.52%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW---------------IFWVGPFVGALAAA-AYHQYILR 544
            + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W               +   GP VGA+  A AY + I R
Sbjct:   52 VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 257          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 61/214 (28.50%), Postives = 91/214 (42.52%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW---------------IFWVGPFVGALAAA-AYHQYILR 544
            + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W               +   GP VGA+  A AY + I R
Sbjct:   52 VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 257          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 61/214 (28.50%), Postives = 91/214 (42.52%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW---------------IFWVGPFVGALAAA-AYHQYILR 544
            + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W               +   GP VGA+  A AY + I R
Sbjct:   52 VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 257          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 48/179 (26.82%), Postives = 82/179 (45.81%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 538
            + V++Y T  ISG H NPAVT    + R+    +   Y+ AQ  G++     ++   K    +  G         +   AL AEII +F+L++ +       R+     V  LA + +G  + +      PI+G  +NPARS G A++      +   W++ VGP +G ++    +  I
Sbjct:   86 VMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWHQVPLYIGAQFAGSLLASLTLRLMFKVTPEAFFG----TTPADSPARALVAEIIISFLLMFVISGVATDNRA-----VGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMG---VYKHIWVYIVGPVLGVISGGFVYNLI 252          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: YFF4_YEAST (Uncharacterized membrane protein YFL054C OS=Saccharomyces cerevisiae GN=YFL054C PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 62/200 (31.00%), Postives = 84/200 (42.00%), Query Frame = 2
Query:   14 VYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGAN--TVASG----------YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPV---LAPLPIGFAVFMVHLATIPITGTGINPARSFG----AAVIYNNDKA-----WDDHWIFWVGPFVGALAAAAYHQYIL 541
            VY   GISGGHINPAVT  + + RK    +   Y+VAQ +GA  G  +   +         GG +  T A+G              +A   E IG  +LV  + +  D      DS+ P    +  L IGF V  + +A    T   INPAR  G    A++I     A     W   W  W GP  G +A A  +   +
Sbjct:  396 VYVAGGISGGHINPAVTISMAIFRKFPWKKVPVYIVAQIIGAYFGGAMAYGYFWSSITEFEGGPHIRTTATGACLFTDPKSYVTWRNAFFDEFIGASILVGCLMALLD------DSNAPPGNGMTALIIGFLVAAIGMALGYQTSFTINPARDLGPRIFASMIGYGPHAFHLTHWWWTWGAWGGPIAGGIAGALIYDIFI 589          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 61/214 (28.50%), Postives = 92/214 (42.99%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW--IFWVG-------------PFVGALAAA-AYHQYILR 544
            + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W  + + G             P VGA+  A AY + I R
Sbjct:   52 VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFSPIVGAIVGAFAYRKLIGR 257          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: GLPF_STRPN (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae GN=glpF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 55/186 (29.57%), Postives = 87/186 (46.77%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSA-------LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN-------NDKAWDDHWIFWVGPFVGALAA 517
            + V V+ +  +S  ++NPAVT G+ L   +     + Y++AQ  GA+ G  LV    K  Y +     N +A+ ++ G A       L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR  G  ++++        D  W   WI  VGP +GA  A
Sbjct:   49 VAVAVFVSGKLSPAYLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGPVIGAALA 227          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: SIP12_MAIZE (Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 44/175 (25.14%), Postives = 73/175 (41.71%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLA--RKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 520
            +FV       + G   NP      + A     SL      + AQ  GA+ G   +   M  +Y  + GG +     +   +  GAE++ TFV+   V          +    P++    I      + L+    TG  +NPA +FG A + N    W+  +++W+ PF+GA+ AA
Sbjct:   58 LFVFNILCDALGGASFNPTGVAAFYAAGVTSPSLFSIALRLPAQAAGAVGGALAISELMPAQYRHMLGGPSLKVDPH---TGAGAELVLTFVITLAVLLII-----VKGPRNPIIKTWMISICTLCLVLSGAAYTGPSMNPANAFGWAYVNNRHNTWEQFYVYWICPFIGAILAA 224          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: GLPF_HAEIN (Glycerol uptake facilitator protein OS=Haemophilus influenzae GN=glpF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 50/161 (31.06%), Postives = 74/161 (45.96%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVA-SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 433
            + + VY TAG+SG H+NPAVT  L+        + + Y+++Q LGA     LV A  ++                E  SL G  +T      + G A   E + T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR FG
Sbjct:   50 VALAVYATAGLSGAHLNPAVTIALWKFACFDGKKVIPYIISQMLGAFFAAALVYALYRNVFIDYETVHNIVRGTQESLSLAGTFSTYPHPSLSIGGAFAVEFVITAILMALIMALTDDGNGVPRG---PLAPLLIGILIAVIGGAMGPLTGFAMNPARDFG 207          
BLAST of DC900303 vs. ExPASy Swiss-Prot
Match: NIP61_ARATH (Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 48/179 (26.82%), Postives = 81/179 (45.25%), Query Frame = 2
Query:    2 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 538
            + +++  T  ISG H+NPAVT      +         Y+ AQ + ++     +KA  +    ++ GG      G ++  AL  E I +F L++ V +     R+     V  LA + +G  V +  L   P T   +NP R+ G A+  NN +A    W++   P +GAL  A  +  +
Sbjct:  123 VMIVILSTGHISGAHLNPAVTIAFAALKHFPWKHVPVYIGAQVMASVSAAFALKAVFE---PTMSGGVTVPTVGLSQAFAL--EFIISFNLMFVVTAVATDTRA-----VGELAGIAVGATVMLNILIAGPATSASMNPVRTLGPAIAANNYRA---IWVYLTAPILGALIGAGTYTIV 288          
The following BLAST results are available for this feature:
BLAST of DC900303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
GLPF_ECOLI2.319e-1228.50Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL62.319e-1228.50Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO572.319e-1228.50Glycerol uptake facilitator protein OS=Escherichia... [more]
NIP41_ARATH5.167e-1226.82Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
YFF4_YEAST8.813e-1231.00Uncharacterized membrane protein YFL054C OS=Saccha... [more]
GLPF_SHIFL8.813e-1228.50Glycerol uptake facilitator protein OS=Shigella fl... [more]
GLPF_STRPN1.151e-1129.57Glycerol uptake facilitator protein OS=Streptococc... [more]
SIP12_MAIZE1.503e-1125.14Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1[more]
GLPF_HAEIN1.963e-1131.06Glycerol uptake facilitator protein OS=Haemophilus... [more]
NIP61_ARATH2.564e-1126.82Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1... [more]

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Properties
Property NameValue
Genbank descriptionDC900303 VSS Citrus sinensis cDNA clone VS28652 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900303 ID=DC900303; Name=DC900303; organism=Citrus sinensis; type=EST; length=658bp
GATCTTCGTCCTTGTTTACTGCACCGCTGGCATTTCTGGTGGTCACATTA
ACCCTGCTGTGACGTTTGGGCTGTTCTTGGCAAGGAAGGTATCATTGATC
AGGGCTGTGGCTTACATGGTGGCTCAGTGCTTGGGTGCCATTTGCGGTGT
TGGTTTGGTCAAGGCCTTCATGAAGCATGAGTACAACTCACTTGGTGGTG
GTGCTAACACTGTGGCTTCTGGCTACAACAAAGGATCAGCCTTGGGTGCT
GAGATTATTGGTACCTTCGTGCTTGTTTACACAGTCTTCTCGGCCACAGA
CCCCAAGAGAAGCGCTCGTGACTCTCACGTGCCCGTTTTGGCTCCACTTC
CAATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCCATCACT
GGAACGGGCATCAACCCTGCTAGGAGCTTTGGTGCTGCTGTTATCTACAA
CAATGACAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGTCCTTTCG
TTGGAGCATTGGCTGCAGCGGCATACCACCAGTACATCTTGAGGGCTGCT
GCTATCAAGGCTTTGGGATCATTCCGCAGCAACCCTTCAAACTAAGAAAG
CAAATTATGATGAATATGAACCACCAACCAGAATAGCTNTTTCCTTTCTC
TCTTTCTG
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