DC900300

Overview
NameDC900300
Unique NameDC900300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1384 contig Csv1_Contig1384:801..1435. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: TMN1_YEAST (Transmembrane 9 superfamily member 1 OS=Saccharomyces cerevisiae GN=EMP70 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   70 TYMHLCVEDWRWWWKAFFASGS-VALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            TY  LC+E+W+W W+ F   G+  ALYVF++SI +  F    L G  + +LY+GYS ++++   L TG+IGF++S  FV  ++SS+K+D
Sbjct:  582 TYHSLCLENWKWQWRGFIIGGAGCALYVFIHSILFTKF---KLGGFTTIVLYVGYSSVISLLCCLVTGSIGFISSMLFVRKIYSSIKVD 667          
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    1 VFGFXXXXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            +FGF                    Y  LC ED  WWW++F  +GS +LY+F+YS+++  F    ++  +S+LL   YS IM++A    TGTIGF + ++ V  ++SS+ I+
Sbjct:  533 IFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSF--FRYLGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641          
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: TMN2_YEAST (Transmembrane 9 superfamily member 2 OS=Saccharomyces cerevisiae GN=TMN2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 34/89 (38.20%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   70 TYMHLCVEDWRWWWKAFFASG-SVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            TY  LC+E+W W W++F   G   ++Y F++SI +  F    L G ++ +LYLGYSLI++    + TG IGF +S +F+  ++S++K++
Sbjct:  587 TYYSLCLENWLWQWRSFIIGGLGCSIYTFIHSILFTKF---KLGGVITVVLYLGYSLIISALCCVVTGAIGFFSSMFFIRKIYSAIKVE 672          
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   70 TYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            TY  L  ED+RWWW++  + GS  L++FLYS+ Y      ++SG V  + + GYSL+      L  GTI F +S  F+ Y++ ++K+D
Sbjct:  503 TYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589          
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   70 TYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            TY  L  ED+RWWW++  + GS  L++FLYS+ Y      ++SG V  + + GYSL+      L  GTI F +S  F+ Y++ ++K+D
Sbjct:  520 TYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   70 TYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            TY  L  ED+RWWW++  + GS  L++FLYS+ Y      ++SG V  + + GYSL+      L  GTI F +S  F+ Y++ ++K+D
Sbjct:  520 TYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   70 TYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            TY  L  ED+RWWW++  + GS  L++FLYS+ Y      ++SG V  + + GYSL+      L  GTI F +S  F+ Y++ ++K+D
Sbjct:  520 TYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYA-RRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   70 TYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            TY  L  ED+RWWW++  + GS  L++FLYS+ Y      ++SG V  + + GYSL+      L  GTI F +S  F+ Y++ ++K+D
Sbjct:  520 TYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYA-RRSNMSGTVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   70 TYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            TY  L +ED +WWW +F   GS  +++++YSI Y  + +  + G + A  Y  Y LI+     +  GT+GF +S  FV  ++ ++K D
Sbjct:  501 TYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYY-ISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKSD 587          
BLAST of DC900300 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   70 TYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 333
            TY  L  ED+RW W +F ++ S A+YV++YS  Y  F  + + G      Y GY  + + A+ +  G IG++ +  FV  ++++VKID
Sbjct:  501 TYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTK-MYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587          
The following BLAST results are available for this feature:
BLAST of DC900300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TMN1_YEAST2.102e-1542.70Transmembrane 9 superfamily member 1 OS=Saccharomy... [more]
PHG1A_DICDI3.585e-1534.23Putative phagocytic receptor 1a OS=Dictyostelium d... [more]
TMN2_YEAST1.362e-1438.20Transmembrane 9 superfamily member 2 OS=Saccharomy... [more]
TM9S1_RAT3.035e-1438.64Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S1_PONAB3.035e-1438.64Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_MOUSE3.035e-1438.64Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_HUMAN3.035e-1438.64Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN3.035e-1438.64Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
PHG1B_DICDI6.329e-1234.09Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S3_MOUSE5.358e-1135.23Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionDC900300 VSS Citrus sinensis cDNA clone VS28647 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900300 ID=DC900300; Name=DC900300; organism=Citrus sinensis; type=EST; length=634bp
GTCTTTGGTTTTCTGCTGATAGTTCTTTTGTTGCTGGTTGTTGTTTGCGC
TGAAGTGTCTGTGGTCCTAACATACATGCATCTTTGTGTGGAGGATTGGC
GTTGGTGGTGGAAGGCTTTCTTTGCTTCAGGATCAGTTGCACTGTATGTG
TTCCTGTACTCTATCAACTATTTGGTATTTGACCTGCAGAGTTTGAGTGG
ACCCGTCTCTGCTCTACTATATCTTGGTTATTCATTAATCATGGCAGTCG
CAATCATGTTGGCAACCGGCACCATTGGCTTCCTTACGTCTTTTTACTTC
GTCCATTACCTTTTCTCGTCTGTAAAGATTGACTGAAAAATTGTGTTTGT
GAATCAATCTTCATCGACCAGGTAGAGAAGACTCCAGTACGTAGGAAGAG
GGAGTTTTCTTGGTTCAGCCTTCCTTTTGATAGATTTAGAGATTATGATA
TGCTGTCTCATTCCCCTATATTGTTGTTCTTGTTTTTCCTATTTTACTAC
TTTTGAGCATCATTTTGGATTACCTCTCTCAGTTTACATTGACTGTTCTA
CAAAATTGTAATTTGTTGGTTTTGCTCTCCTTGTACTTTCGTTAGCTTTA
TCATTGAAGAGAATTTAAATAGTCTTTTTCTTTA
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