CX043630

Overview
NameCX043630
Unique NameCX043630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX043630 vs. ExPASy Swiss-Prot
Match: ERG1_SCHPO (Probable squalene monooxygenase OS=Schizosaccharomyces pombe GN=SPBC713.12 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 43/129 (33.33%), Postives = 66/129 (51.16%), Query Frame = -1 
Query:  357 DFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPS---PKRMWIGARLISGASGIIFPIIKAE 734
            D  D   +   +  F+  RK  +  IN L+ ALYK+F+   ++  K +   C DY   GG    GP+ LL GL+  P  L+ HF+AV +YG+ + +L  P+   P R+     +   AS +I P I +E
Sbjct:  327 DLLDYERILNQMNKFHWKRKGYSFVINVLSIALYKLFTPK-NRYMKALESGCIDYFKRGGNCVEGPIRLLGGLDHSPSHLIGHFYAVCLYGIYQYVLSGPALLMPVRIIESLLIFLQASLVIIPYILSE 454
The following BLAST results are available for this feature:
BLAST of CX043630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ERG1_SCHPO3.324e-1133.33Probable squalene monooxygenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12D04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12D04-G8-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043630 ID=CX043630; Name=CX043630; organism=Citrus sinensis; type=EST; length=758bp
GTTTTTCTTTCTCTGGAGACTGAGACTTACAAATAGATATCCCTTTCAGT
TTTAAGATAATAAAGTATCATACAATACAATTATGGGATTGTTTGTATGA
TTTTATCCATCCTCGAAACCACAAATAATTATATAATGTCCACGTTCTTC
TGTTTTCTATCTTTTTACCCTTTTTAACAAAGGCAGTTTGCATATAAGAT
GTCCTTAAGGTTGATGGAGGTTCAGATACAAGAGGCACGTTCTTAATAGC
AACAAAGCCTCAGCTACATTGATTTTTGTTTGGTATGTCAATCCTCAACA
GGAGGGGCTCTGTAGACAGCAGGTATGGTGGCAGGGAAGAACATTTGCCT
CACTCCTTCGGCCTTAATGATGGGGAAAATGATACCTGATGCACCCGAAA
TTAACCTAGCTCCAATCCACATGCGCTTAGGTGAAGGAAACGGCAGTAGC
AAACGACCGACACCATATATTGCCACAGCAAAGAAATGAAGAACTAAACT
CAAGGGGCGAGGGTTTAGACCAGAAAGTAGAGCAACTGGTCCAGTTGAAA
AGACACCTCCAAGGCTTAAATAATCGAAACATGCTTGGCGCATTTCCTTC
CTTGCTTGATCAGGAGAAGAGGAAAACACCTTGTAAAGGGCACCTGCCAG
AGTATTTATTGTAGATGCCACTGGCTTGCGCAGGGTGTAAAAGGACTCAA
GATATCGGCCAAGAGAAGCTGCGTCGTTAAAGTCATGGAGTGGCTTAAGA
AGATTCCT
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