DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 81/158 (51.27%), Postives = 111/158 (70.25%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A + +PSIVFIDEIDA+G  R +A + G+RE+QRT+++LL  +DGF+ RGDVK+I ATNRI+ LD ALLRPGR DR IE PLPD + R  I ++HT  M L++DV+L E     +  +GA++ AIC EAG+ A+R+   +V   DF
Sbjct:  230 EGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDF 387          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.660e-38
Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            D F +A + +PSI+FIDE+DA+GTKR+D+   G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPALLR GR+DRKIEFP+P+ + R RI QIH+ +M ++ DVN EE             K    EAG++ALR
Sbjct:  254 DAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCPTISMALSAKQFGVEAGMIALR 393          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 77/158 (48.73%), Postives = 105/158 (66.46%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A      I+F DEIDA+G  R+D  +GG+ E+QRTMLEL+ QLDGFD RG++KV+ ATNR  +LD AL+RPGRIDRK+EF LPD++ R  I +IH   M +  D+  E         +GA+++++CTEAG+ A+R RR   T  DF
Sbjct:  256 EGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDF 413          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.310e-38
Identity = 80/157 (50.96%), Postives = 108/157 (68.79%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            E  R   ++FR+A + +PSI+FIDEIDA+ +KR D  + G+RE+QRTML+LL +LDGFD   +VKVI ATNR++ +DPA+LRPGR DR IE PLP ++ R  I  IHT +  +A DV+LE      + FSGAD+KA+  EAG  A+R     +T  D
Sbjct:  216 EGARLVREIFRLAREKAPSILFIDEIDAIASKRVDIGTSGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDD 372          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 76/158 (48.10%), Postives = 106/158 (67.09%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   ++F  A D  P ++F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+I+ATNR + LDPALLRPGR+DRKIE PLP+   R  + +IH + +T   DV+ E      D F+ AD++ +CTEAG+ A+R  R  V   DF
Sbjct:  214 ESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDF 371          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 78/157 (49.68%), Postives = 107/157 (68.15%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            E  R   ++F +A   +PSIVFIDEIDA+G KR D  + GEREIQRT+++LL ++DGF    +VK+I ATNR++ LDPALLRPGR DR IE PLP+ + R+ IF+I+  +M    ++  +      + FSGA+IK +CTEAG +A+R  R  V  TD
Sbjct:  211 EGARIVREVFELARRKAPSIVFIDEIDAIGAKRVDMGTSGEREIQRTLMQLLAEIDGFKPLDNVKIIAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEAGYIAIRNGRKYVNMTD 367          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 76/158 (48.10%), Postives = 107/158 (67.72%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A   SPSI+FIDEIDA+G  R ++++ G+RE+ RT+++LL ++DGF +RGDV++I ATNRI+ LD ALLRPGR DR IE P PDI+ R  I  IH + M +   V++ +     D  +GAD+++IC EAG+ A+R     VT  DF
Sbjct:  230 EGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNTSGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFAIRSDHEMVTLEDF 387          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 73/157 (46.50%), Postives = 106/157 (67.52%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            E  R   ++F  A +  P I+F+DE+DA+G +R+   +  +REIQRT++ELL Q+DGFD+ G  K+I+ATNR ++LDPALLRPGR+DRK+E PLP+   R  IF+IHT+++    + + E  V   D F+GADI+   TEAG  A+R+ R  +   D
Sbjct:  258 ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDD 414          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.651e-36
Identity = 68/151 (45.03%), Postives = 108/151 (71.52%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            ++F +A   +PSI+FIDE+D++  +R +  +G +RE+QRT+++LL ++DGFD R ++++I ATNR + LDPA+LRPGR DR +  P+P I+ R +I +IH  +MTLA D++ ++     +  SGAD+KAI TEAG+ A+R+ +  V   DF
Sbjct:  243 EIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDF 393          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.651e-36
Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   ++F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+I+ATNR ++LDPALLRPGR+DRKI   LP+ + R  I +IH   +T   +++ E  V   D F+GAD++ +CTEAG+ A+R     V   DF
Sbjct:  210 ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDF 367          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
PSMR_METHJ5.707e-3951.27Proteasome-activating nucleotidase OS=Methanospiri... [more]
PR6AA_XENLA1.660e-3855.7126S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PRS7_SCHPO2.169e-3848.7326S protease regulatory subunit 7 homolog OS=Schiz... [more]
PSMR_AERPE6.310e-3850.96Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS10_DICDI1.406e-3748.1026S protease regulatory subunit S10B OS=Dictyostel... [more]
PSMR_SULTO4.090e-3749.68Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_METPE1.554e-3648.10Proteasome-activating nucleotidase OS=Methanosphae... [more]
PRS10_YEAST1.554e-3646.5026S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PSMR_METAC2.651e-3645.03Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS10_SPETR2.651e-3647.4726S protease regulatory subunit S10B OS=Spermophil... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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