DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.651e-36
Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   ++F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+I+ATNR ++LDPALLRPGR+DRKI   LP+ + R  I +IH   +T   +++ E  V   D F+GAD++ +CTEAG+ A+R     V   DF
Sbjct:  210 ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDF 367          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.651e-36
Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   ++F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+I+ATNR ++LDPALLRPGR+DRKI   LP+ + R  I +IH   +T   +++ E  V   D F+GAD++ +CTEAG+ A+R     V   DF
Sbjct:  210 ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDF 367          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.906e-36
Identity = 67/151 (44.37%), Postives = 108/151 (71.52%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            ++F +A   +PSI+FIDE+D++  +R +  +G +RE+QRT+++LL ++DGFD R ++++I ATNR + LDPA+LRPGR DR +  P+P I+ R +I +IH  +MTLA+D++ ++     +  SGAD+KAI TEAG+ A+R  +  V   +F
Sbjct:  243 EIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEF 393          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.713e-36
Identity = 75/158 (47.47%), Postives = 105/158 (66.46%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   ++F  A D  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD+   VK+I+ATNR ++LDPALLRPGR+DRKI   LP+ + R  I +IH   +T   +++ E  V   D F+GAD+  +CTEAG+ A+R     V   DF
Sbjct:  210 ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDF 367          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.007e-35
Identity = 72/157 (45.86%), Postives = 107/157 (68.15%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            E  R   ++F  A +  P ++F+DEIDA+G +R+   +  +REIQRT++ELLNQ+DGFD  G  K+I+ATNR ++LDPALLRPGR+DRKIE PLP+   R  I +IH  +++   +++ E  V   D  +GAD++ + TEAG +A++E R  V  +D
Sbjct:  209 ESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSD 365          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.353e-31
Identity = 70/147 (47.62%), Postives = 100/147 (68.03%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E+   ++F  A + +PSI+FIDEID++  KR +     ER   R + +LL  +DG ++RGDV VI ATNR +++DPAL RPGR DR+IE  +PD + R+ I +IHT +M LA+DV+LEE     + F GAD++A+C EA + ALR
Sbjct:  259 ESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTGEVER---RVVAQLLALMDGLEARGDVIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAAMHALR 402          

HSP 2 Score: 134.806 bits (338), Expect = 4.380e-31
Identity = 69/148 (46.62%), Postives = 96/148 (64.86%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+   ++FR A  ++P ++F DEID++  +R     G     +R + +LL +LDG +   DV VI ATNR + +DPALLRPGR++R I  P PD K R  IF+IH     LADDVN+EE     + +SGADI+A+C EAG+LA+RE
Sbjct:  532 ESEKHVREMFRKARQVAPCVIFFDEIDSLAPRR--GGIGDSHVTERVVSQLLTELDGLEELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVCREAGMLAIRE 677          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.720e-31
Identity = 72/148 (48.65%), Postives = 97/148 (65.54%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+   ++FR A   +P I+F DEIDA+  KR    S    +  + + +LL +LDG +   DV VI ATNR + +DPALLRPGR+DR I  P+PD K R  IF+IHT  M LA+DVNLEE     + ++GADI+A+C EA +LA+RE
Sbjct:  529 ESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTD--KVVNQLLTELDGMEEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIEALCREAAMLAVRE 674          

HSP 2 Score: 125.561 bits (314), Expect = 2.657e-28
Identity = 70/147 (47.62%), Postives = 91/147 (61.90%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E     +F  A++ +PSI+FIDEIDA+  KR +A    ER   R + +LL  +DG   RG V VI ATNR  +LDPAL RPGR DR+I   +PD + R+ I QIHT  M LA+DV+L+        F GAD+ A+C EA + ALR
Sbjct:  256 ETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVER---RLVAQLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLADVTHGFVGADLAALCKEAAMRALR 399          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAT5_HUMAN (Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E ER   + FR A  ++PSI+F DE+DA+  +R  +   G     R + +LL ++DG +   DV ++ ATNR + +D AL+RPGRIDR I  PLPD  TRR IF++    M ++++V+L+E ++  D +SGA+I A+C EA LLAL E
Sbjct:  704 ESERAVRETFRKARAVAPSIIFFDELDALAVERGSSLGAGN-VADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVDLDELILQTDAYSGAEIVAVCREAALLALEE 850          

HSP 2 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT-LADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E +   +F  A    PSI+FIDE+DA+  KR  A +  E+ +  ++L L++ +    S G V V+ ATNR  +LD AL RPGR D++IE  +P+ + R  I Q    R+  L  +  L +   +   + GAD+K +C EAGL ALR
Sbjct:  430 ETEAKLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVLCNEAGLCALR 577          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E++  ++F  A D SPSI+FIDE+D++  KR D     ER   R + +LL  +DG + RG V VI ATNR++++DPAL RPGR DR+IE  +PD   R  I +IHT  M L+DDVNL         F GADI+++  EA + ALR
Sbjct:  266 ESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDVTGEVER---RVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGFVGADIESLSKEAAMRALR 409          

HSP 2 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 57/148 (38.51%), Postives = 87/148 (58.78%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+     FR A  ++P+++F DE+D++   R    +GG    +R + +LL +LDG +   +V VI ATNR + +DPAL+R GR DR ++   P I+ R +I +IHT    LA DV+L E     D + G+D+  I  EA + ALR+
Sbjct:  539 ESEKAIRQTFRKARQVAPTVIFFDELDSLAPGR--GQTGGNNVSERVVNQLLTELDGLEEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELAERADGYVGSDLANIAREAAIEALRD 684          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAT5_MOUSE (Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.354e-29
Identity = 66/148 (44.59%), Postives = 96/148 (64.86%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E ER   ++FR A  ++PSI+F DE+DA+  +R  + SG      R + +LL ++DG +   +V V+ ATNR + +D AL+RPGRIDR I  PLPD  TRR I  +    M ++++V+L+E V+  D +SGA+I A+C EA LLAL E
Sbjct:  704 ESERAVREIFRKARAVAPSIIFFDELDALAVER-GSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVCKEAALLALEE 850          

HSP 2 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 59/148 (39.86%), Postives = 82/148 (55.41%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT-LADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E     +F  A    PSI+FIDE+DA+  KR  A S  E+ +  ++L L++ +    S G V V+ ATNR ++LD AL RPGR D++IE  +P+ + R  I Q    R+  L     L         + GAD+KA+C EAGL ALR
Sbjct:  430 ETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALR 577          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
PRS10_MOUSE2.651e-3647.4726S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN2.651e-3647.4726S protease regulatory subunit S10B OS=Homo sapie... [more]
PSMR_METMA5.906e-3644.37Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS10_BOVIN7.713e-3647.4726S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS10_SCHPO1.007e-3545.86Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
Y1297_ARCFU3.353e-3147.62Cell division cycle protein 48 homolog AF_1297 OS=... [more]
Y1156_METJA5.720e-3148.65Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
SPAT5_HUMAN4.099e-2943.92Spermatogenesis-associated protein 5 OS=Homo sapie... [more]
CDCH_HALSA4.099e-2946.94Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
SPAT5_MOUSE5.354e-2944.59Spermatogenesis-associated protein 5 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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